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Massive Multi-Omics Microbiome Database (M3DB) is a data warehousing and analytics solution designed to handle diverse, complex, and unprecedented volumes of sequence and taxonomic classification data obtained in a typical microbiome…

Other Quantitative Biology · Quantitative Biology 2015-12-14 Shaun W. Norris , Steven P. Bradley , Hardik I. Parikh , Nihar U. Sheth

A common approach to data analysis involves understanding and manipulating succinct representations of data. In earlier work, we put forward a succinct representation system for relational data called factorised databases and reported on…

Databases · Computer Science 2013-07-02 Nurzhan Bakibayev , Tomáš Kočiský , Dan Olteanu , Jakub Závodný

As high-dimensional vector data increasingly surpasses the processing capabilities of traditional database management systems, Vector Databases (VDBs) have emerged and become tightly integrated with large language models, being widely…

We present EntropyDB, an interactive data exploration system that uses a probabilistic approach to generate a small, query-able summary of a dataset. Departing from traditional summarization techniques, we use the Principle of Maximum…

Databases · Computer Science 2019-11-13 Laurel Orr , Magdalena Balazinska , Dan Suciu

The number of databases as well as their size and complexity is increasing. This creates a barrier to use especially for non-experts, who have to come to grips with the nature of the data, the way it has been represented in the database,…

Computation and Language · Computer Science 2021-04-15 Adrián Bazaga , Nupur Gunwant , Gos Micklem

Traditional DBMSs execute user- or application-provided SQL queries over relational data with strong semantic guarantees and advanced query optimization, but writing complex SQL is hard and focuses only on structured tables. Contemporary…

Databases · Computer Science 2025-12-15 Guorui Xiao , Enhao Zhang , Nicole Sullivan , Will Hansen , Magdalena Balazinska

With the rapid development of big data and artificial intelligence technologies, the demand for effective processing and retrieval of vector data is growing. Against this backdrop, I have developed the Bhakti vector database, aiming to…

Databases · Computer Science 2025-04-08 Zihao Wu

In the last few years, the field of data science has been growing rapidly as various businesses have adopted statistical and machine learning techniques to empower their decision making and applications. Scaling data analysis, possibly…

Databases · Computer Science 2021-02-11 Phanwadee Sinthong , Michael J. Carey

Distributed databases, as the core infrastructure software for internet applications, play a critical role in modern cloud services. However, existing distributed databases frequently experience system failures and performance degradation,…

Databases · Computer Science 2025-05-06 Lingzhe Zhang , Tong Jia , Mengxi Jia , Ying Li

In recent years, resource elasticity and cost optimization have become essential for RDBMSs. While cloud-native RDBMSs provide elastic computing resources via disaggregated computing and storage, storage costs remain a critical user…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-26 Qingda Hu , Xinjun Yang , Feifei Li , Junru Li , Ya Lin , Yuqi Zhou , Yicong Zhu , Junwei Zhang , Rongbiao Xie , Ling Zhou , Bin Wu , Wenchao Zhou

In the last decade, document store database systems have gained more traction for storing and querying large volumes of semi-structured data. However, the flexibility of the document stores' data models has limited their ability to store…

Databases · Computer Science 2021-11-24 Wail Y. Alkowaileet , Michael J. Carey

Spreadsheet software is the tool of choice for interactive ad-hoc data management, with adoption by billions of users. However, spreadsheets are not scalable, unlike database systems. On the other hand, database systems, while highly…

Databases · Computer Science 2017-10-09 Mangesh Bendre , Vipul Venkataraman , Xinyan Zhou , Kevin Chang , Aditya Parameswaran

Hybrid storage solutions have emerged as potent strategies to alleviate the data storage bottlenecks prevalent in blockchain systems. These solutions harness off-chain Storage Services Providers (SPs) in conjunction with Authenticated Data…

Modern applications, such as social networking systems and e-commerce platforms are centered around using large-scale storage systems for storing and retrieving data. In the presence of concurrent accesses, these storage systems trade off…

Programming Languages · Computer Science 2021-03-05 Ranadeep Biswas , Diptanshu Kakwani , Jyothi Vedurada , Constantin Enea , Akash Lal

Databases are widespread, yet extracting relevant data can be difficult. Without substantial domain knowledge, multivariate search queries often return sparse or uninformative results. This paper introduces an approach for searching…

Artificial Intelligence · Computer Science 2017-04-05 Feras Saad , Leonardo Casarsa , Vikash Mansinghka

The fundamental basis for maintaining integrity within contemporary blockchain systems is provided by authenticated databases. Our analysis indicates that a significant portion of the approaches applied in this domain fail to sufficiently…

Cryptography and Security · Computer Science 2025-08-15 Bernhard Kauer , Aleksandr Petrosyan , Benjamin Livshits

Recent excitement in the database community surrounding new applications?analytic, scientific, graph, geospatial, etc.?has led to an explosion in research on database storage systems. New storage systems are vital to the database community,…

Databases · Computer Science 2009-09-15 Philippe Cudre-Mauroux , Eugene Wu , Sam Madden

The proliferation of small files in data lakes poses significant challenges, including degraded query performance, increased storage costs, and scalability bottlenecks in distributed storage systems. Log-structured table formats (LSTs) such…

The Protein Data Bank (PDB) contains more than 135 000 entries today. From these, relatively few amyloid structures can be identified, since amyloids are insoluble in water. Therefore, mostly solid state NMR-recorded amyloid structures are…

Biomolecules · Quantitative Biology 2018-05-28 Kristof Takacs , Balint Varga , Vince Grolmusz

In this systems paper, we present MillenniumDB: a novel graph database engine that is modular, persistent, and open source. MillenniumDB is based on a graph data model, which we call domain graphs, that provides a simple abstraction upon…