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Accurate prediction of nuclear magnetic resonance (NMR) chemical shifts is fundamental to spectral analysis and molecular structure elucidation, yet existing machine learning methods rely on limited, labor-intensive atom-assigned datasets.…

Machine Learning · Computer Science 2026-01-27 Yongqi Jin , Yecheng Wang , Jun-jie Wang , Rong Zhu , Guolin Ke , Weinan E

Representation learning is a critical ingredient for natural language processing systems. Recent Transformer language models like BERT learn powerful textual representations, but these models are targeted towards token- and sentence-level…

Computation and Language · Computer Science 2020-05-21 Arman Cohan , Sergey Feldman , Iz Beltagy , Doug Downey , Daniel S. Weld

Instance segmentation of novel objects instances in RGB images, given some example images for each object, is a well known problem in computer vision. Designing a model general enough to be employed for all kinds of novel objects without…

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Deep representation learning is a crucial procedure in multimedia analysis and attracts increasing attention. Most of the popular techniques rely on convolutional neural network and require a large amount of labeled data in the training…

Computer Vision and Pattern Recognition · Computer Science 2020-09-14 Jinghua Wang , Adrian Hilton , Jianmin Jiang

Accurately predicting infrared (IR) spectra in computational chemistry using ab initio methods remains a challenge. Current approaches often rely on an empirical approach or on tedious anharmonic calculations, mainly adapted to semi-rigid…

Chemical Physics · Physics 2024-09-05 Saleh Abdul Al , Abdul-Rahman Allouche

Nuclear Magnetic Resonance (NMR) spectroscopy is one of the most powerful and widely used tools for molecular structure elucidation in organic chemistry. However, the interpretation of NMR spectra to determine unknown molecular structures…

Chemical Physics · Physics 2025-09-03 Yongqi Jin , Jun-Jie Wang , Fanjie Xu , Xiaohong Ji , Zhifeng Gao , Linfeng Zhang , Guolin Ke , Rong Zhu , Weinan E

Deep learning computer vision techniques have achieved many successes in recent years across numerous imaging domains. However, the application of deep learning to spectral data remains a complex task due to the need for augmentation…

Image and Video Processing · Electrical Eng. & Systems 2021-08-18 Conor C. Horgan , Mads S. Bergholt

Interstellar molecules, which play an important role in astrochemistry, are identified using observed spectral lines. Despite the advent of spectral analysis tools in the past decade, the identification of spectral lines remains a tedious…

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Tandem mass spectrometry (MS/MS) stands as the predominant high-throughput technique for comprehensively analyzing protein content within biological samples. This methodology is a cornerstone driving the advancement of proteomics. In recent…

Quantitative Methods · Quantitative Biology 2024-06-27 Shiva Ebrahimi , Xuan Guo

For brain tumour segmentation, deep learning models can achieve human expert-level performance given a large amount of data and pixel-level annotations. However, the expensive exercise of obtaining pixel-level annotations for large amounts…

Computer Vision and Pattern Recognition · Computer Science 2023-10-11 Xiao Liu , Antanas Kascenas , Hannah Watson , Sotirios A. Tsaftaris , Alison Q. O'Neil

Decoding the orchestration of neural activity in electroencephalography (EEG) signals is a central challenge in bridging neuroscience with artificial intelligence. Foundation models have made strides in generalized EEG decoding, yet many…

Machine Learning · Computer Science 2026-03-31 Davy Darankoum , Chloé Habermacher , Julien Volle , Sergei Grudinin

The annotation (assigning structural chemical identities) of MS/MS spectra remains a significant challenge due to the enormous molecular diversity in biological samples and the limited scope of reference databases. Currently, the vast…

Machine Learning · Computer Science 2025-04-30 Yinkai Wang , Xiaohui Chen , Liping Liu , Soha Hassoun

Machine learning models are increasingly applied to biomedical data, yet their adoption in high stakes domains remains limited by poor robustness, limited interpretability, and instability of learned features under realistic data…

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Hyperspectral imaging (HSI) unlocks the huge potential to a wide variety of applications relied on high-precision pathology image segmentation, such as computational pathology and precision medicine. Since hyperspectral pathology images…

Image and Video Processing · Electrical Eng. & Systems 2021-03-08 Boxiang Yun , Yan Wang , Jieneng Chen , Huiyu Wang , Wei Shen , Qingli Li

Intelligent spectroscopy serves as a pivotal element in AI-driven closed-loop scientific discovery, functioning as the critical bridge between matter structure and artificial intelligence. However, conventional expert-dependent spectral…

Mass spectrometry is the dominant technology in the field of proteomics, enabling high-throughput analysis of the protein content of complex biological samples. Due to the complexity of the instrumentation and resulting data, sophisticated…

Tandem mass spectra capture fragmentation patterns that provide key structural information about a molecule. Although mass spectrometry is applied in many areas, the vast majority of small molecules lack experimental reference spectra. For…

Machine Learning · Computer Science 2023-05-03 Adamo Young , Bo Wang , Hannes Röst

Foundation models are now increasingly being developed for Earth observation (EO), yet they often rely on stochastic masking that do not explicitly enforce physics constraints; a critical trustworthiness limitation, in particular for…

Artificial Intelligence · Computer Science 2026-05-05 Syed Usama Imtiaz , Mitra Nasr Azadani , Nasrin Alamdari

Mass spectrometry is a powerful and widely used tool for identifying molecular structures due to its sensitivity and ability to profile complex samples. However, translating spectra into full molecular structures is a difficult,…

Machine Learning · Computer Science 2026-03-13 Ghaith Mqawass , Tuan Le , Fabian Theis , Djork-Arné Clevert

Traditional sequential recommendation (SR) models learn low-dimensional item ID embeddings from user-item interactions, often overlooking textual information such as item titles or descriptions. Recent advances in Large Language Models…

Information Retrieval · Computer Science 2026-04-27 Yu Cui , Feng Liu , Zhaoxiang Wang , Changwang Zhang , Jun Wang , Can Wang , Jiawei Chen