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Related papers: Multimodal Medical Code Tokenizer

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Traditional diagnosis of chronic diseases involves in-person consultations with physicians to identify the disease. However, there is a lack of research focused on predicting and developing application systems using clinical notes and blood…

Software Engineering · Computer Science 2024-06-27 Chun-Chieh Liao , Wei-Ting Kuo , I-Hsuan Hu , Yen-Chen Shih , Jun-En Ding , Feng Liu , Fang-Ming Hung

Contemporary cardiovascular management involves complex consideration and integration of multimodal cardiac datasets, where each modality provides distinct but complementary physiological characteristics. While the effective integration of…

Large Audio Language Models (LALMs) have emerged with strong performance across diverse audio understanding tasks and can be further enhanced by neural audio codecs. Transitioning from multi-layer residual vector quantizers to a…

Sound · Computer Science 2025-12-05 Jingyi Li , Zhiyuan Zhao , Zhisheng Zhang , Yunfei Liu , Lijian Lin , Ye Zhu , Jiahao Wu , Qiuqiang Kong , Yu Li

Medical coding converts free-text clinical notes into standardized diagnostic and procedural codes, which are essential for billing, hospital operations, and medical research. Unlike ordinary text classification, it requires multi-step…

Artificial Intelligence · Computer Science 2025-11-18 Jiyang Zheng , Islam Nassar , Thanh Vu , Xu Zhong , Yang Lin , Tongliang Liu , Long Duong , Yuan-Fang Li

Automated International Classification of Diseases (ICD) coding assigns standardized diagnosis and procedure codes to clinical records, playing a critical role in healthcare systems. However, existing methods face challenges such as…

Computation and Language · Computer Science 2025-11-12 Mucheng Ren , He Chen , Yuchen Yan , Danqing Hu , Jun Xu , Xian Zeng

This paper proposes CODER: contrastive learning on knowledge graphs for cross-lingual medical term representation. CODER is designed for medical term normalization by providing close vector representations for different terms that represent…

Computation and Language · Computer Science 2021-05-19 Zheng Yuan , Zhengyun Zhao , Haixia Sun , Jiao Li , Fei Wang , Sheng Yu

Making the most use of abundant information in electronic health records (EHR) is rapidly becoming an important topic in the medical domain. Recent work presented a promising framework that embeds entire features in raw EHR data regardless…

Machine Learning · Computer Science 2023-05-11 Eunbyeol Cho , Min Jae Lee , Kyunghoon Hur , Jiyoun Kim , Jinsung Yoon , Edward Choi

ICD coding is designed to assign the disease codes to electronic health records (EHRs) upon discharge, which is crucial for billing and clinical statistics. In an attempt to improve the effectiveness and efficiency of manual coding, many…

Computation and Language · Computer Science 2023-05-31 Zichen Liu , Xuyuan Liu , Yanlong Wen , Guoqing Zhao , Fen Xia , Xiaojie Yuan

We present Multimodal OCR (MOCR), a document parsing paradigm that jointly parses text and graphics into unified textual representations. Unlike conventional OCR systems that focus on text recognition and leave graphical regions as cropped…

Digital healthcare systems have enabled the collection of mass healthcare data in electronic healthcare records (EHRs), allowing artificial intelligence solutions for various healthcare prediction tasks. However, existing studies often…

Machine Learning · Computer Science 2025-08-27 Zi Cai , Yu Liu , Zhiyao Luo , Tingting Zhu

The widespread adoption of Electronic Health Record (EHR) systems in healthcare institutes has generated vast amounts of medical data, offering significant opportunities for improving healthcare services through deep learning techniques.…

Machine Learning · Computer Science 2024-01-23 Suhan Cui , Jiaqi Wang , Yuan Zhong , Han Liu , Ting Wang , Fenglong Ma

The remarkable success of Large Language Models (LLMs) across diverse tasks has driven the research community to extend their capabilities to molecular applications. However, most molecular LLMs employ adapter-based architectures that do…

Computation and Language · Computer Science 2025-06-24 Shuhan Guo , Yatao Bian , Ruibing Wang , Nan Yin , Zhen Wang , Quanming Yao

Predicting future clinical events from longitudinal electronic health records (EHRs) requires selecting plausible outcomes from a large and structured event space under sparse observations. While clinical coding systems provide hierarchical…

Machine Learning · Computer Science 2026-05-08 Zhan Qu , Michael Färber

Recent progress in vision-language modeling for 3D medical imaging has been fueled by large-scale computed tomography (CT) corpora with paired free-text reports, stronger architectures, and powerful pretrained models. This has enabled…

Computer Vision and Pattern Recognition · Computer Science 2025-10-24 Ibrahim Ethem Hamamci , Sezgin Er , Suprosanna Shit , Hadrien Reynaud , Dong Yang , Pengfei Guo , Marc Edgar , Daguang Xu , Bernhard Kainz , Bjoern Menze

Data in the healthcare domain arise from a variety of sources and modalities, such as x-ray images, continuous measurements, and clinical notes. Medical practitioners integrate these diverse data types daily to make informed and accurate…

Machine Learning · Computer Science 2024-08-14 Liv Björkdahl , Oskar Pauli , Johan Östman , Chiara Ceccobello , Sara Lundell , Magnus Kjellberg

Structured Electronic Health Record (EHR) data stores patient information in relational tables and plays a central role in clinical decision-making. Recent advances have explored the use of large language models (LLMs) to process such data,…

Artificial Intelligence · Computer Science 2026-04-02 Xiao Yang , Xuejiao Zhao , Zhiqi Shen

Embedding models have become essential for retrieval-augmented generation (RAG) tasks, semantic clustering, and text re-ranking. But despite their growing use, many of these come with notable limitations. For example, Jina fails to capture…

Information Retrieval · Computer Science 2025-05-21 Anand Selvadurai , Jasheen Shaik , Girish Chandrasekar , ShriRadhaKrishnan Balamurugan , Eswara Reddy

Clinical notes in healthcare facilities are tagged with the International Classification of Diseases (ICD) code; a list of classification codes for medical diagnoses and procedures. ICD coding is a challenging multilabel text classification…

Computation and Language · Computer Science 2023-06-02 Thanh-Tung Nguyen , Viktor Schlegel , Abhinav Kashyap , Stefan Winkler

Automated clinical risk prediction from electronic health records (EHRs) demands modeling both structured diagnostic codes and unstructured narrative notes. However, most prior approaches either handle these modalities separately or rely on…

Computation and Language · Computer Science 2025-09-26 Xin Zhang , Qiyu Wei , Yingjie Zhu , Fanyi Wu , Sophia Ananiadou

Multimodal deep learning foundation models can learn the relationship between images and text. In the context of medical imaging, mapping images to language concepts reflects the clinical task of diagnostic image interpretation, however…

Computer Vision and Pattern Recognition · Computer Science 2023-09-06 Matthew Christensen , Milos Vukadinovic , Neal Yuan , David Ouyang