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Computational notebooks have gained widespread adoption among researchers from academia and industry as they support reproducible science. These notebooks allow users to combine code, text, and visualizations for easy sharing of experiments…

Computers and Society · Computer Science 2020-06-23 Sheeba Samuel , Birgitta König-Ries

Understanding a program's runtime reasoning behavior, meaning how intermediate states and control flows lead to final execution results, is essential for reliable code generation, debugging, and automated reasoning. Although large language…

Software Engineering · Computer Science 2025-12-02 Mohammad Abdollahi , Khandaker Rifah Tasnia , Soumit Kanti Saha , Jinqiu Yang , Song Wang , Hadi Hemmati

Computational notebooks are the primary coding tools for data scientists, but their code quality remains understudied and often poor. Given the importance of maintainability and reusability, enhancing code understandability is essential.…

Software Engineering · Computer Science 2025-06-19 Mojtaba Mostafavi Ghahfarokhi , Alireza Asadi , Arash Asgari , Bardia Mohammadi , Abbas Heydarnoori , Masih Beigi Rizi

Context. Large Language Models (LLMs) are increasingly embedded in software engineering workflows for tasks including code generation, summarization, repair, and testing. Empirical studies report productivity gains, improved comprehension,…

Software Engineering · Computer Science 2026-01-30 Bruno Claudino Matias , Savio Freire , Juliana Freitas , Felipe Fronchetti , Kostadin Damevski , Rodrigo Spinola

Large Language Models have gained remarkable interest in industry and academia. The increasing interest in LLMs in academia is also reflected in the number of publications on this topic over the last years. For instance, alone 78 of the…

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure

Software developers often submit questions to technical Q&A sites like Stack Overflow (SO) to resolve code-level problems. In practice, they include example code snippets with questions to explain the programming issues. Existing research…

Software Engineering · Computer Science 2024-07-16 Saikat Mondal , Banani Roy

Computational notebooks have emerged as the platform of choice for data science and analytical workflows, enabling rapid iteration and exploration. By keeping intermediate program state in memory and segmenting units of execution into…

Software Engineering · Computer Science 2021-06-22 Stephen Macke , Hongpu Gong , Doris Jung-Lin Lee , Andrew Head , Doris Xin , Aditya Parameswaran

With the advent of open source software, a veritable treasure trove of previously proprietary software development data was made available. This opened the field of empirical software engineering research to anyone in academia. Data that is…

Software Engineering · Computer Science 2022-04-19 Adam Tutko , Austin Z. Henley , Audris Mockus

Computational notebooks, such as Jupyter, have been widely adopted by data scientists to write code for analyzing and visualizing data. Despite their growing adoption and popularity, there has been no thorough study to understand Jupyter…

Reading code is an essential activity in software maintenance and evolution. Several studies with human subjects have investigated how different factors, such as the employed programming constructs and naming conventions, can impact code…

Software Engineering · Computer Science 2021-10-05 Delano Oliveira , Reydne Bruno , Fernanda Madeiral , Fernando Castor

Over the past few years, deep learning methods have been applied for a wide range of Software Engineering (SE) tasks, including in particular for the important task of automatically predicting and localizing faults in software. With the…

Software Engineering · Computer Science 2024-02-09 Adil Mukhtar , Dietmar Jannach , Franz Wotawa

Jupyter Notebook is a popular tool among data analysts and scientists for working with data. It provides a way to combine code, documentation, and visualizations in a single, interactive environment, facilitating code reuse. While code…

Software Engineering · Computer Science 2023-02-24 Mingke Yang , Yuming Zhou , Bixin Li , Yutian Tang

The iterative and incremental nature of software development using models typically makes a model of a system incomplete (i.e., partial) until a more advanced and complete stage of development is reached. Existing model execution approaches…

Software Engineering · Computer Science 2021-04-01 Mojtaba Bagherzadeh , Nafiseh Kahani , Karim Jahed , Juergen Dingel

Context: Empirical Software Engineering (ESE) faces increasing challenges due to data scale, methodological complexity, and reproducibility concerns. Large Language Models (LLMs) have emerged as promising tools to support empirical…

Software Engineering · Computer Science 2026-04-30 Victoria Gomes , Delaney Selb , Fabio Palomba , Rodrigo Spinola , David Lo

Reproducibility of computational research is critical for ensuring transparency, reliability and reusability. Challenges with computational reproducibility have been documented in several fields, but healthcare discrete-event simulation…

Other Quantitative Biology · Quantitative Biology 2025-09-17 Amy Heather , Thomas Monks , Alison Harper , Navonil Mustafee , Andrew Mayne

Interactive notebooks, such as Jupyter, have revolutionized the field of data science by providing an integrated environment for data, code, and documentation. However, their adoption by robotics researchers and model developers has been…

Computational Engineering, Finance, and Science · Computer Science 2024-05-15 Rolando Garcia

In recent years, Jupyter notebooks have grown in popularity in several domains of software engineering, such as data science, machine learning, and computer science education. Their popularity has to do with their rich features for…

Software Engineering · Computer Science 2022-04-01 Konstantin Grotov , Sergey Titov , Vladimir Sotnikov , Yaroslav Golubev , Timofey Bryksin

Software libraries are central to the functionality, security, and maintainability of modern code. As developers increasingly turn to Large Language Models (LLMs) to assist with programming tasks, understanding how these models recommend…

Software Engineering · Computer Science 2025-08-08 Jasmine Latendresse , SayedHassan Khatoonabadi , Emad Shihab

A significant portion of student programming submissions in CS1 learning environments are uncompilable, limiting their use in student modeling and downstream knowledge tracing. Traditional modeling pipelines often exclude these cases,…

Software Engineering · Computer Science 2025-12-24 Griffin Pitts , Aum Pandya , Darsh Rank , Tirth Bhatt , Muntasir Hoq , Bita Akram