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This document explores the advantages of integrating open source software and practices in managing a scientific lab, emphasizing reproducibility and the avoidance of pitfalls. It details practical applications from website management using…

Computers and Society · Computer Science 2024-05-14 Julien Cohen-Adad

Reproducibility has been consistently identified as an important component of scientific research. Although there is a general consensus on the importance of reproducibility along with the other commonly used 'R' terminology (i.e.,…

Information Theory · Computer Science 2020-12-29 Anirudh Prabhu , Peter Fox

Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in domains such as systems biology where there have been…

Quantitative Methods · Quantitative Biology 2021-04-13 Michael L. Blinov , John H. Gennari , Jonathan R. Karr , Ion I. Moraru , David P. Nickerson , Herbert M. Sauro

This is the first part of a small-scale explorative study in an effort to start assessing reproducibility issues specific to scientometrics research. This effort is motivated by the desire to generate empirical data to inform debates about…

Digital Libraries · Computer Science 2018-04-16 Ludo Waltman , Sybille Hinze , Andrea Scharnhorst , Jesper Wiborg Schneider , Theresa Velden

These lectures about lattice field theory were written for, and given at, TASI 2019, ``The many dimensions of quantum field theory.'' The students at this TASI were mostly interested in formal things, and so these are slightly unusual…

High Energy Physics - Theory · Physics 2019-07-09 Thomas DeGrand

Gender disparity in science is one of the most focused debating points among authorities and the scientific community. Over the last few decades, numerous initiatives have endeavored to accelerate gender equity in academia and research…

Social and Information Networks · Computer Science 2021-06-04 Anahita Hajibabaei , Andrea Schiffauerova , Ashkan Ebadi

Transparency and reproducibility are often seen in opposition to privacy and confidentiality. Data that need to be kept confidential are seen as an impediment to reproducibility, and privacy would seem to inhibit transparency. I bring a…

General Economics · Economics 2023-07-06 Lars Vilhuber

The debate on data access and privacy is an ongoing one. It is kept alive by the never-ending changes/upgrades in (i) the shape of the data collected (in terms of size, diversity, sensitivity and quality), (ii) the laws governing data…

Computers and Society · Computer Science 2023-04-14 Fida K. Dankar

Finite fields form an important chapter in abstract algebra, and mathematics in general. We aim to provide a geometric and intuitive model for finite fields, involving algebraic numbers, in order to make them accessible and interesting to a…

History and Overview · Mathematics 2017-08-31 Lucian M. Ionescu , Mina M. Zarrin

I will propose a new way of advancing white dwarf research. Open science is a method of doing research that lets everyone who has something to say about the subject take part in the problem solving process. Already now, the amount of…

Instrumentation and Methods for Astrophysics · Physics 2012-10-03 Tommi Vornanen

With the advent of Open Science, researchers have started to publish their research artefacts (i. e., data, software, and other products of the investigations) in order to allow others to reproduce their investigations. While this…

Digital Libraries · Computer Science 2019-05-02 Max Schröder , Frank Krüger , Sascha Spors

Reproducibility of computational studies is a hallmark of scientific methodology. It enables researchers to build with confidence on the methods and findings of others, reuse and extend computational pipelines, and thereby drive scientific…

Data Science is currently a popular field of science attracting expertise from very diverse backgrounds. Current learning practices need to acknowledge this and adapt to it. This paper summarises some experiences relating to such learning…

General Literature · Computer Science 2018-07-11 Yehia Elkhatib

The research content hosted by arXiv is not fully accessible to everyone due to disabilities and other barriers. This matters because a significant proportion of people have reading and visual disabilities, it is important to our community…

I give an elementary introduction to the study of gauge theories coupled to fermions with many degrees of freedom. Besides their intrinsic interest, these theories are candidates for nonperturbative extensions of the Higgs sector of the…

High Energy Physics - Lattice · Physics 2015-05-20 Thomas DeGrand

One of the challenges in machine learning research is to ensure that presented and published results are sound and reliable. Reproducibility, that is obtaining similar results as presented in a paper or talk, using the same code and data…

Reproducibility is inseparable from transparency, as sharing data, code and computational environment is a pre-requisite for being able to retrace the steps of producing the research results. Others have made the case that this artifact…

Computers and Society · Computer Science 2022-05-19 Lorena A. Barba

Knowledge graphs (KGs) are widely used for representing and organizing structured knowledge in diverse domains. However, the creation and upkeep of KGs pose substantial challenges. Developing a KG demands extensive expertise in data…

Information Retrieval · Computer Science 2023-09-19 Samira Babalou , Sheeba Samuel , Birgitta König-Ries

Round table discussions are in the tradition of ACAT. This year's plenary round table discussion was devoted to questions related to the use of scientific software in High Energy Physics and beyond. The 90 minutes of discussion were lively,…

High Energy Physics - Phenomenology · Physics 2015-06-22 Federico Carminati , Denis Perret-Gallix , Tord Riemann
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