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RFdiffusion is a popular and well-established model for generation of protein structures. However, this generative process offers limited insight into its internal representations and how they contribute to the final protein structure.…

Quantitative Methods · Quantitative Biology 2025-12-01 Wojciech Zarzecki , Paulina Szymczak , Ewa Szczurek , Kamil Deja

As AI models achieve remarkable capabilities across diverse domains, understanding what representations they learn and how they encode concepts has become increasingly important for both scientific progress and trustworthy deployment.…

Machine Learning · Computer Science 2026-05-05 Yiming Tang , Harshvardhan Saini , Zhaoqian Yao , Zheng Lin , Yizhen Liao , Jingyi Cui , Yisen Wang , Mengnan Du , Dianbo Liu

Sparse autoencoders (SAEs) enable feature-level mechanistic interpretability and activation steering in large language models (LLMs), but SAE-based language control remains unreliable in multilingual settings: most SAEs are trained on…

Computation and Language · Computer Science 2026-05-25 Yusser Al Ghussin , Daniil Gurgurov , Tanja Baeumel , Josef van Genabith , Patrick Schramowski , Simon Ostermann

To advance the state of the art in the creation of 3D foundation models, this paper introduces the ConDense framework for 3D pre-training utilizing existing pre-trained 2D networks and large-scale multi-view datasets. We propose a novel…

Computer Vision and Pattern Recognition · Computer Science 2024-09-02 Xiaoshuai Zhang , Zhicheng Wang , Howard Zhou , Soham Ghosh , Danushen Gnanapragasam , Varun Jampani , Hao Su , Leonidas Guibas

Feature selection is a critical component in predictive analytics that significantly affects the prediction accuracy and interpretability of models. Intrinsic methods for feature selection are built directly into model learning, providing a…

Machine Learning · Computer Science 2024-03-19 Theodor Stoecker , Nico Hambauer , Patrick Zschech , Mathias Kraus

Interpreting data is central to modern research. Large language models (LLMs) show promise in providing such natural language interpretations of data, yet simple feature extraction methods such as prompting often fail to produce accurate…

Artificial Intelligence · Computer Science 2025-05-30 Michal Bravansky , Vaclav Kubon , Suhas Hariharan , Robert Kirk

We study the task of cleaning scanned text documents that are strongly corrupted by dirt such as manual line strokes, spilled ink etc. We aim at autonomously removing dirt from a single letter-size page based only on the information the…

Computer Vision and Pattern Recognition · Computer Science 2014-10-21 Zhenwen Dai , Jörg Lücke

Large Language Models (LLMs) encode factual knowledge within hidden parametric spaces that are difficult to inspect or control. While Sparse Autoencoders (SAEs) can decompose hidden activations into more fine-grained, interpretable…

Machine Learning · Computer Science 2026-01-14 Minglai Yang , Xinyu Guo , Zhengliang Shi , Jinhe Bi , Steven Bethard , Mihai Surdeanu , Liangming Pan

We use sparse autoencoder (SAE) feature steering to amplify Dark Triad personality traits (Machiavellianism, narcissism, and psychopathy) in Llama-3.3-70B-Instruct and evaluate the resulting behavioral changes across five psychological…

Computation and Language · Computer Science 2026-05-12 Cameron Berg , Roshni Lulla

Large Language Models (LLMs) often generate inconsistent responses when prompted with semantically equivalent paraphrased inputs. Recently, activation steering, a technique that modulates LLMs' behaviours by adjusting their latent…

Computation and Language · Computer Science 2025-01-23 Jingyuan Yang , Rongjun Li , Weixuan Wang , Ziyu Zhou , Zhiyong Feng , Wei Peng

The recently proposed multi-layer sparse model has raised insightful connections between sparse representations and convolutional neural networks (CNN). In its original conception, this model was restricted to a cascade of convolutional…

Image and Video Processing · Electrical Eng. & Systems 2018-07-26 Aviad Aberdam , Jeremias Sulam , Michael Elad

Despite the widely reported success of embedding-based machine learning methods on natural language processing tasks, the use of more easily interpreted engineered features remains common in fields such as cognitive impairment (CI)…

Machine Learning · Computer Science 2020-10-14 Benjamin Eyre , Aparna Balagopalan , Jekaterina Novikova

For large language models (LLMs), sparse autoencoders (SAEs) have been shown to decompose intermediate representations that often are not interpretable directly into sparse sums of interpretable features, facilitating better control and…

Fine-tuning pre-trained transformers is a powerful technique for enhancing the performance of base models on specific tasks. From early applications in models like BERT to fine-tuning Large Language Models (LLMs), this approach has been…

Computation and Language · Computer Science 2025-02-25 Suneel Nadipalli

The rapid development of generative AI has transformed content creation, communication, and human development. However, this technology raises profound concerns in high-stakes domains, demanding rigorous methods to analyze and evaluate…

Computer Vision and Pattern Recognition · Computer Science 2026-04-23 Yiming Tang , Arash Lagzian , Srinivas Anumasa , Qiran Zou , Yingtao Zhu , Ye Zhang , Trang Nguyen , Yih-Chung Tham , Ehsan Adeli , Ching-Yu Cheng , Yilun Du , Dianbo Liu

We study how features emerge, disappear, and persist across models fine-tuned on different domains of text. More specifically, we start from a base one-layer Transformer language model that is trained on a combination of the BabyLM corpus,…

Computation and Language · Computer Science 2024-10-17 Niels Horn , Desmond Elliott

Self-supervision based on the information extracted from large knowledge graphs has been shown to improve the generalization of language models, in zero-shot evaluation on various downstream language reasoning tasks. Since these…

Computation and Language · Computer Science 2022-05-24 Jiarui Zhang , Filip Ilievski , Kaixin Ma , Jonathan Francis , Alessandro Oltramari

Sparse coding is a common approach to learning local features for object recognition. Recently, there has been an increasing interest in learning features from spatio-temporal, binocular, or other multi-observation data, where the goal is…

Computer Vision and Pattern Recognition · Computer Science 2012-06-22 Roland Memisevic

Interpretation and explanation of deep models is critical towards wide adoption of systems that rely on them. In this paper, we propose a novel scheme for both interpretation as well as explanation in which, given a pretrained model, we…

Computer Vision and Pattern Recognition · Computer Science 2019-03-11 Jose Oramas , Kaili Wang , Tinne Tuytelaars

Sparse autoencoders (SAEs) are a recent technique for decomposing neural network activations into human-interpretable features. However, in order for SAEs to identify all features represented in frontier models, it will be necessary to…

Machine Learning · Computer Science 2025-06-04 Anish Mudide , Joshua Engels , Eric J. Michaud , Max Tegmark , Christian Schroeder de Witt