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The concept of structured occurrence nets is an extension of that of occurrence nets which are directed acyclic graphs that represent causality and concurrency information concerning a single execution of a distributed system. The formalism…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-17 Mohammed Alahmadi , Salma Alharbi , Talal Alharbi , Nadiyah Almutairi , Tuwailaa Alshammari , Anirban Bhattacharyya , Maciej Koutny , Bowen Li , Brian Randell

In the past years, network theory has successfully characterized the interaction among the constituents of a variety of complex systems, ranging from biological to technological, and social systems. However, up until recently, attention was…

Spatial classification with limited feature observations has been a challenging problem in machine learning. The problem exists in applications where only a subset of sensors are deployed at certain spots or partial responses are collected…

Machine Learning · Computer Science 2020-09-03 Arpan Man Sainju , Wenchong He , Zhe Jiang , Da Yan , Haiquan Chen

In the past two decades, significant advances have been made in understanding the structural and functional properties of biological networks, via graph-theoretic analysis. In general, most graph-theoretic studies are conducted in the…

Physics and Society · Physics 2013-10-21 Michelle Rudolph-Lilith , Lyle E. Muller

Mutualistic interactions, where species interact to obtain mutual benefits, constitute an essential component of natural ecosystems. The use of ecological networks to represent the species and their ecological interactions allows the study…

Populations and Evolution · Quantitative Biology 2023-11-28 Clàudia Payrató-Borràs , Carlos Gracia-Lázaro , Laura Hernández , Yamir Moreno

In recent years, promising mathematical models have been suggested which aim to describe conscious experience and its relation to the physical domain. Whereas the axioms and metaphysical ideas of these theories have been carefully…

Neurons and Cognition · Quantitative Biology 2020-07-15 Johannes Kleiner

This paper explores the hard problem of consciousness from a different perspective. Instead of drawing distinctions between the physical and the mental, an exploration of a more foundational relationship is examined: the relationship…

Neurons and Cognition · Quantitative Biology 2025-05-12 Ryan Williams

Modeling the behavior of coupled networks is challenging due to their intricate dynamics. For example in neuroscience, it is of critical importance to understand the relationship between the functional neural processes and anatomical…

Machine Learning · Computer Science 2021-04-20 Hongyuan You , Sikun Lin , Ambuj K. Singh

The integration and transmission of information in the brain are dependent on the interplay between structural and dynamical properties. Implicit in any pursuit aimed at understanding neural dynamics from appropriate sets of mathematically…

Neurons and Cognition · Quantitative Biology 2020-06-30 Joshua M. Roldan , Sebastian Pardo G. , Vivek Kurien George , Gabriel A. Silva

Higher-order interactions provide a nuanced understanding of the relational structure of complex systems beyond traditional pairwise interactions. However, higher-order network analyses also incur more cumbersome interpretations and greater…

Physics and Society · Physics 2026-01-07 Alec Kirkley , Helcio Felippe , Federico Battiston

The evolutionary relationships among organisms have traditionally been represented using rooted phylogenetic trees. However, due to reticulate processes such as hybridization or lateral gene transfer, evolution cannot always be adequately…

Populations and Evolution · Quantitative Biology 2022-01-20 Sungsik Kong , Joan Carles Pons , Laura Kubatko , Kristina Wicke

Feature models are widely used to capture the configuration space of software systems. Although automated reasoning has been studied for detecting problematic features and supporting configuration tasks, significantly less attention has…

Software Engineering · Computer Science 2026-03-18 Jose Manuel Sanchez , Miguel Angel Olivero , Ruben Heradio , Luis Cambelo , David Fernandez-Amoros

Causal Bayesian networks have become a powerful technology for reasoning under uncertainty in areas that require transparency and explainability, by relying on causal assumptions that enable us to simulate hypothetical interventions. The…

Artificial Intelligence · Computer Science 2023-03-14 Anthony C. Constantinou , Zhigao Guo , Neville K. Kitson

The complexity of many biological, social and technological systems stems from the richness of the interactions among their units. Over the past decades, a great variety of complex systems has been successfully described as networks whose…

Connected acyclic graphs (trees) are data objects that hierarchically organize categories. Collections of trees arise in a diverse variety of fields, including evolutionary biology, public health, machine learning, social sciences and…

Methodology · Statistics 2025-12-01 Maria Alejandra Valdez Cabrera , Amy D Willis , Armeen Taeb

Large knowledge graphs combine human knowledge garnered from projects ranging from academia and institutions to enterprises and crowdsourcing. Within such graphs, each relationship between two nodes represents a basic fact involving these…

Artificial Intelligence · Computer Science 2024-06-11 Loïck Lhote , Béatrice Markhoff , Arnaud Soulet

In this article, we employ mathematical concepts as a tool to examine the phenomenon of consciousness experience and logical phenomena. Through our investigation, we aim to demonstrate that our experiences, while not confined to…

Neurons and Cognition · Quantitative Biology 2024-01-23 Kazem Haghnejad Azar

Statistical learning in high-dimensional spaces is challenging without a strong underlying data structure. Recent advances with foundational models suggest that text and image data contain such hidden structures, which help mitigate the…

Machine Learning · Statistics 2025-02-04 Charles Arnal , Clement Berenfeld , Simon Rosenberg , Vivien Cabannes

Graphical models can represent a multivariate distribution in a convenient and accessible form as a graph. Causal models can be viewed as a special class of graphical models that not only represent the distribution of the observed system…

Methodology · Statistics 2017-06-29 Christina Heinze-Deml , Marloes H. Maathuis , Nicolai Meinshausen

Prior work has shown that coupling sequential latent variable models with semantic ontological knowledge can improve the representational capabilities of event modeling approaches. In this work, we present a novel, doubly hierarchical,…

Computation and Language · Computer Science 2023-05-31 Shubhashis Roy Dipta , Mehdi Rezaee , Francis Ferraro