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We study the behavior of phylogenetic tree shapes in the tropical geometric interpretation of tree space. Tree shapes are formally referred to as tree topologies; a tree topology can also be thought of as a tree combinatorial type, which is…

Combinatorics · Mathematics 2023-01-25 Bo Lin , Anthea Monod , Ruriko Yoshida

A salient feature of topological phases are surface states and many of the widely studied physical properties are directly tied to their existence. Although less explored, a variety of topological phases can however similarly be…

Mesoscale and Nanoscale Physics · Physics 2021-08-11 Toshikaze Kariyado , Robert-Jan Slager

Time has entered the domain of topological phases in the field of non-Hermitian physics. Previous studies have relied on periodic modulation in time to make an intuitive connection to established spatial topological invariants, albeit with…

Visualization of turbulent flows is a powerful tool to help understand the turbulence dynamics and induced transport. However, it does not provide a quantitative description of the observed structures. In this paper, an approach to…

Plasma Physics · Physics 2009-11-13 Benjamin A. Carreras , Irene Llerena , Luis Garcia , Ivan Calvo

Galaxies comprise intricate networks of interdependent processes which together govern their evolution. Central among these are the multiplicity of feedback channels, which remain incompletely understood. One outstanding problem is the…

Astrophysics of Galaxies · Physics 2023-12-11 Brent Tan , Drummond B. Fielding

The past few years have seen intensive research efforts carried out in some apparently unrelated areas of dynamic systems -- delay-tolerant networks, opportunistic-mobility networks, social networks -- obtaining closely related insights.…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-02-20 Arnaud Casteigts , Paola Flocchini , Walter Quattrociocchi , Nicola Santoro

Topological dynamical systems $(X,T)$ are actions $T \times X \to X$, given as $(t, x) \to tx$, on a compact, Hausdorff topological space $X$ with $T$ as an acting group or monoid. We take up the property of topological transitivity…

Dynamical Systems · Mathematics 2021-11-30 Anima Nagar

We study the topology associated with physical vector and scalar fields. A mathematical object, e.g., a ball, can be continuously deformed, without tearing or gluing, to make other topologically equivalent objects, e.g., a cube or a solid…

High Energy Astrophysical Phenomena · Physics 2021-01-12 Amir Jafari , Ethan Vishniac

We explore the topological aspect of dynamics in a micro-electro-mechanical system (MEMS), which is a combination of an electric-circuit system and a mass-spring system. A simplest example is a sequential chain of capacitors and springs. It…

Mesoscale and Nanoscale Physics · Physics 2021-05-05 Motohiko Ezawa

Topological metamaterials have invaded the mechanical world, demonstrating acoustic cloaking and waveguiding at finite frequencies and variable, tunable elastic response at zero frequency. Zero frequency topological states have previously…

Soft Condensed Matter · Physics 2018-12-05 Adrien Saremi , D. Zeb Rocklin

Deterministic many-body systems governed by simple interactions can self-organize into macroscopic patterns, and the determinants of long-time behavior are assumed to be encoded in the initial configuration. Here we show that predictability…

Biological Physics · Physics 2026-04-02 Lars Koopmans , Elinor M. Kay , Hyun Youk

Turbulent flow fields can be expanded into a series in a set of basic functions. The terms of such series are often called modes. A master- (or determining) mode set is a subset of these modes, the time history of which uniquely determines…

Fluid Dynamics · Physics 2008-09-18 Sergei Chernyshenko , Maksym Bondarenko

Current wind turbine simulations successfully use turbulence generating tools for modeling behavior. However, they lack the ability to reproduce variabilities in wind dynamics and inherent stochastic structures (like temporal and spatial…

Numerical Analysis · Mathematics 2016-03-29 Qiang Guo , Daniel Rajewski , Eugene Takle , Baskar Ganapathysubramanian

We propose a definition of phase transitions in finite systems based on topology anomalies of the event distribution in the space of observations. This generalizes all the definitions based on the curvature anomalies of thermodynamical…

Statistical Mechanics · Physics 2009-10-31 Ph. Chomaz , F. Gulminelli , V. Duflot

Thin cylindrical membranes arise in a wide variety of biological systems ranging from tubular structures on and within cell membranes to in-vitro experiments on artificial vesicles. Motor proteins embedded in such fluidic membranes often…

Fluid Dynamics · Physics 2025-07-09 Udaya Maurya , Surya Teja Gavva , Arpan Saha , Rickmoy Samanta

This paper explores the concept of topological transitivity in nonautonomous dynamical systems, which are defined as sequences of continuous maps from a compact metric space to itself. It investigates various conditions (including…

Dynamical Systems · Mathematics 2025-01-22 Michal Málek

Polymers with active segments constitute prospective future materials and are used as a model for some biological systems such as chromatin. The directions of the active forces are typically introduced with temporal or spatial correlations…

Soft Condensed Matter · Physics 2024-11-25 Adam H. T. P. Höfler , Iurii Chubak , Christos N. Likos , Jan Smrek

For many networks, the connection pattern (often called the topology) can vary in time, depending on the changing state, or mode, of the modules within the network. For example, "airplane mode" is the name for one communicative mode of a…

Dynamical Systems · Mathematics 2015-12-15 David I. Spivak , Joshua Z. Tan

Singularities, i.e. places of discontinuities of parameters are extremely general objects appearing in electromagnetic waves and thus are the key to understanding fundamental wave processes. These structures commonly occur in purely…

Optics · Physics 2017-11-15 Vladlen Shvedov , W. Krolikowski

Magnetic clouds (MCs) are "magnetized plasma clouds" moving in the solar wind. MCs transport magnetic flux and helicity away from the Sun. These structures are not stationary but feature temporal evolution as they propagate in the solar…

Solar and Stellar Astrophysics · Physics 2015-05-30 G. Dalakishvili , J. Kleimann , H. Fichtner , S. Poedts