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Medical foundation models show promise to learn broadly generalizable features from large, diverse datasets. This could be the base for reliable cross-modality generalization and rapid adaptation to new, task-specific goals, with only a few…

Distributed memory machines equipped with CPUs and GPUs (hybrid computing nodes) are hard to program because of the multiple layers of memory and heterogeneous computing configurations. In this paper, we introduce a region template…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-06-02 George Teodoro , Tony Pan , Tahsin Kurc , Jun Kong , Lee Cooper , Scott Klasky , Joel Saltz

Automated medical coding, an essential task for healthcare operation and delivery, makes unstructured data manageable by predicting medical codes from clinical documents. Recent advances in deep learning and natural language processing have…

Computation and Language · Computer Science 2024-05-15 Shaoxiong Ji , Wei Sun , Xiaobo Li , Hang Dong , Ara Taalas , Yijia Zhang , Honghan Wu , Esa Pitkänen , Pekka Marttinen

Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…

Computation and Language · Computer Science 2020-04-08 Allen Schmaltz , Andrew Beam

This work presents a novel Bayesian framework for unsupervised domain adaptation (UDA) in medical image segmentation. While prior works have explored this clinically significant task using various strategies of domain alignment, they often…

Computer Vision and Pattern Recognition · Computer Science 2025-02-18 Xin Wang , Yin Guo , Kaiyu Zhang , Niranjan Balu , Mahmud Mossa-Basha , Linda Shapiro , Chun Yuan

An increasing number of public datasets have shown a marked impact on automated organ segmentation and tumor detection. However, due to the small size and partially labeled problem of each dataset, as well as a limited investigation of…

Image and Video Processing · Electrical Eng. & Systems 2024-06-27 Jie Liu , Yixiao Zhang , Jie-Neng Chen , Junfei Xiao , Yongyi Lu , Bennett A. Landman , Yixuan Yuan , Alan Yuille , Yucheng Tang , Zongwei Zhou

Electronic health records (EHR) contain large volumes of unstructured text, requiring the application of Information Extraction (IE) technologies to enable clinical analysis. We present the open-source Medical Concept Annotation Toolkit…

Symptom information is primarily documented in free-text clinical notes and is not directly accessible for downstream applications. To address this challenge, information extraction approaches that can handle clinical language variation…

Computation and Language · Computer Science 2023-02-27 Sitong Zhou , Kevin Lybarger , Meliha Yetisgen , Mari Ostendorf

This article presents our steps to integrate complex and partly unstructured medical data into a clinical research database with subsequent decision support. Our main application is an integrated faceted search tool, accompanied by the…

Human-Computer Interaction · Computer Science 2018-10-31 Daniel Sonntag , Hans-Jürgen Profitlich

Problem lists are intended to provide clinicians with a relevant summary of patient medical issues and are embedded in many electronic health record systems. Despite their importance, problem lists are often cluttered with resolved or…

Information Retrieval · Computer Science 2020-08-05 Justin Lovelace , Nathan C. Hurley , Adrian D. Haimovich , Bobak J. Mortazavi

Unsupervised domain adaptation (UDA) enables models trained on a labeled source domain to handle new unlabeled domains. Recently, pre-trained vision-language models (VLMs) have demonstrated promising zero-shot performance by leveraging…

Computer Vision and Pattern Recognition · Computer Science 2025-08-08 Xinyao Li , Jingjing Li , Zhekai Du , Lei Zhu , Heng Tao Shen

Structural causal models (SCMs) are a widespread formalism to deal with causal systems. A recent direction of research has considered the problem of relating formally SCMs at different levels of abstraction, by defining maps between SCMs…

Artificial Intelligence · Computer Science 2022-07-19 Fabio Massimo Zennaro

We present the Universal Latent Homeomorphic Manifold (ULHM), a framework that unifies semantic representations (e.g., human descriptions, diagnostic labels) and observation-driven machine representations (e.g., pixel intensities, sensor…

Image and Video Processing · Electrical Eng. & Systems 2026-02-05 Tong Wu , Tayab Uddin Wara , Daniel Hernandez , Sidong Lei

Self-evolving memory serves as the trainable parameters for Large Language Models (LLMs)-based agents, where extraction (distilling insights from experience) and management (updating the memory bank) must be tightly coordinated. Existing…

Computation and Language · Computer Science 2026-02-12 Yongshi Ye , Hui Jiang , Feihu Jiang , Tian Lan , Yichao Du , Biao Fu , Xiaodong Shi , Qianghuai Jia , Longyue Wang , Weihua Luo

Humans naturally communicate through abstract concepts like "mood". However, current image editing benchmarks focus primarily on explicit, literal commands, leaving abstract instructions largely underexplored. In this work, we first…

Computer Vision and Pattern Recognition · Computer Science 2026-05-15 Mor Ventura , Roy Hirsch , Yonatan Bitton , Regev Cohen , Roi Reichart

Cognitive research indicates that abstraction ability is essential in human intelligence, which remains under-explored in language models. In this paper, we present AbsPyramid, a unified entailment graph of 221K textual descriptions of…

Computation and Language · Computer Science 2024-04-02 Zhaowei Wang , Haochen Shi , Weiqi Wang , Tianqing Fang , Hongming Zhang , Sehyun Choi , Xin Liu , Yangqiu Song

Harmonizing medication data across Electronic Health Record (EHR) systems is a persistent barrier to monitoring medications for opioid use disorder (MOUD). In heterogeneous EHR systems, key prescription attributes are scattered across…

Artificial Intelligence · Computer Science 2025-10-27 Zhe Fei , Mehmet Yigit Turali , Shreyas Rajesh , Xinyang Dai , Huyen Pham , Pavan Holur , Yuhui Zhu , Larissa Mooney , Yih-Ing Hser , Vwani Roychowdhury

Existing segmentation models trained on a single medical imaging dataset often lack robustness when encountering unseen organs or tumors. Developing a robust model capable of identifying rare or novel tumor categories not present during…

Computer Vision and Pattern Recognition · Computer Science 2025-07-02 Rong Wu , Ziqi Chen , Liming Zhong , Heng Li , Hai Shu

Imaging has occupied a huge role in the management of patients, whether hospitalized or not. Depending on the patients clinical problem, a variety of imaging modalities were available for use. This gave birth of the annotation of medical…

Computer Vision and Pattern Recognition · Computer Science 2013-07-04 Mouhamed Gaith Ayadi , Riadh Bouslimi , Jalel Akaichi

Multimodal MR-US registration is critical for prostate cancer diagnosis. However, this task remains challenging due to significant modality discrepancies. Existing methods often fail to align critical boundaries while being overly sensitive…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Xudong Ma , Nantheera Anantrasirichai , Stefanos Bolomytis , Alin Achim
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