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With the recent advances in machine learning for quantum chemistry, it is now possible to predict the chemical properties of compounds and to generate novel molecules. Existing generative models mostly use a string- or graph-based…

Biomolecules · Quantitative Biology 2020-10-14 Vitali Nesterov , Mario Wieser , Volker Roth

Fine-grained visual classification is a challenging task that recognizes the sub-classes belonging to the same meta-class. Large inter-class similarity and intra-class variance is the main challenge of this task. Most exiting methods try to…

Computer Vision and Pattern Recognition · Computer Science 2021-02-02 Dongliang Chang , Yixiao Zheng , Zhanyu Ma , Ruoyi Du , Kongming Liang

We study the problem of object detection over scanned images of scientific documents. We consider images that contain objects of varying aspect ratios and sizes and range from coarse elements such as tables and figures to fine elements such…

Computer Vision and Pattern Recognition · Computer Science 2019-10-31 Ankur Goswami , Joshua McGrath , Shanan Peters , Theodoros Rekatsinas

As far as Scene Graph Generation (SGG), coarse and fine predicates mix in the dataset due to the crowd-sourced labeling, and the long-tail problem is also pronounced. Given this tricky situation, many existing SGG methods treat the…

Computer Vision and Pattern Recognition · Computer Science 2023-10-24 Youming Deng , Yansheng Li , Yongjun Zhang , Xiang Xiang , Jian Wang , Jingdong Chen , Jiayi Ma

The past decade has seen a revolution in genomic technologies that enable a flood of genome-wide profiling of chromatin marks. Recent literature tried to understand gene regulation by predicting gene expression from large-scale chromatin…

Machine Learning · Computer Science 2017-11-08 Ritambhara Singh , Jack Lanchantin , Arshdeep Sekhon , Yanjun Qi

Using conservation of energy - a fundamental property of closed classical and quantum mechanical systems - we develop an efficient gradient-domain machine learning (GDML) approach to construct accurate molecular force fields using a…

Multi-modal Large Language Models (MLLMs) have shown remarkable capabilities in various multi-modal tasks. Nevertheless, their performance in fine-grained image understanding tasks is still limited. To address this issue, this paper…

Computer Vision and Pattern Recognition · Computer Science 2024-03-14 Shiyu Xuan , Qingpei Guo , Ming Yang , Shiliang Zhang

Over the past years, semantic segmentation, as many other tasks in computer vision, benefited from the progress in deep neural networks, resulting in significantly improved performance. However, deep architectures trained with…

Computer Vision and Pattern Recognition · Computer Science 2022-02-02 Guanglei Yang , Enrico Fini , Dan Xu , Paolo Rota , Mingli Ding , Hao Tang , Xavier Alameda-Pineda , Elisa Ricci

Learning similarity is a key aspect in medical image analysis, particularly in recommendation systems or in uncovering the interpretation of anatomical data in images. Most existing methods learn such similarities in the embedding space…

Computer Vision and Pattern Recognition · Computer Science 2022-06-22 Sukesh Adiga , Jose Dolz , Herve Lombaert

The limited availability of annotations in small molecule datasets presents a challenge to machine learning models. To address this, one common strategy is to collaborate with additional auxiliary datasets. However, having more data does…

Biomolecules · Quantitative Biology 2023-11-10 Tinglin Huang , Ziniu Hu , Rex Ying

Learning from data has led to paradigm shifts in a multitude of disciplines, including web, text, and image search, speech recognition, as well as bioinformatics. Can machine learning enable similar breakthroughs in understanding quantum…

In recent years the machine learning techniques have shown a great potential in various problems from a multitude of disciplines, including materials design and drug discovery. The high computational speed on the one hand and the accuracy…

Chemical Physics · Physics 2018-05-09 Konstantin Gubaev , Evgeny V. Podryabinkin , Alexander V. Shapeev

Machine learning in drug discovery has been focused on virtual screening of molecular libraries using discriminative models. Generative models are an entirely different approach that learn to represent and optimize molecules in a continuous…

Quantitative Methods · Quantitative Biology 2020-11-17 Matthew Ragoza , Tomohide Masuda , David Ryan Koes

For optimal processing and design of entangled polymeric materials it is important to establish a rigorous link between the detailed molecular composition of the polymer and the viscoelastic properties of the macroscopic melt. We review…

Soft Condensed Matter · Physics 2015-05-27 J. T. Padding , W. J. Briels

A significant portion of the data today, e.g, social networks, web connections, etc., can be modeled by graphs. A proper analysis of graphs with Machine Learning (ML) algorithms has the potential to yield far-reaching insights into many…

Social and Information Networks · Computer Science 2020-09-11 Taha Atahan Akyildiz , Amro Alabsi Aljundi , Kamer Kaya

As vast databases of chemical identities become increasingly available, the challenge shifts to how we effectively explore and leverage these resources to study molecular properties. This paper presents an active learning approach for…

Machine Learning · Computer Science 2025-07-17 Ayana Ghosh , Maxim Ziatdinov , Sergei V. Kalinin

Coarse-graining (CG) enables molecular dynamics (MD) simulations of larger systems and longer timescales that are otherwise infeasible with atomistic models. Machine learning potentials (MLPs), with their capacity to capture many-body…

Chemical Physics · Physics 2025-12-01 Weilong Chen , Franz Görlich , Paul Fuchs , Julija Zavadlav

Attention-based learning for fine-grained image recognition remains a challenging task, where most of the existing methods treat each object part in isolation, while neglecting the correlations among them. In addition, the multi-stage or…

Computer Vision and Pattern Recognition · Computer Science 2018-06-15 Ming Sun , Yuchen Yuan , Feng Zhou , Errui Ding

Small inter-class and large intra-class variations are the main challenges in fine-grained visual classification. Objects from different classes share visually similar structures and objects in the same class can have different poses and…

Computer Vision and Pattern Recognition · Computer Science 2019-09-09 Amir Erfan Eshratifar , David Eigen , Michael Gormish , Massoud Pedram

The combination of modern scientific computing with electronic structure theory can lead to an unprecedented amount of data amenable to intelligent data analysis for the identification of meaningful, novel, and predictive structure-property…

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