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Discovery gene-disease links is important in biology and medicine areas, enabling disease identification and drug repurposing. Machine learning approaches accelerate this process by leveraging biological knowledge represented in ontologies…

Machine Learning · Computer Science 2025-04-14 Catarina Canastra , Cátia Pesquita

This paper introduces MatKG, a novel graph database of key concepts in material science spanning the traditional material-structure-property-processing paradigm. MatKG is autonomously generated through transformer-based, large language…

Materials Science · Physics 2022-11-01 Vineeth Venugopal , Sumit Pai , Elsa Olivetti

Incompleteness is a common problem for existing knowledge graphs (KGs), and the completion of KG which aims to predict links between entities is challenging. Most existing KG completion methods only consider the direct relation between…

Machine Learning · Computer Science 2019-09-27 Yao Zhu , Hongzhi Liu , Zhonghai Wu , Yang Song , Tao Zhang

The objective of knowledge graph embedding is to encode both entities and relations of knowledge graphs into continuous low-dimensional vector spaces. Previously, most works focused on symbolic representation of knowledge graph with…

Computation and Language · Computer Science 2016-12-14 Jiacheng Xu , Kan Chen , Xipeng Qiu , Xuanjing Huang

Entity synonyms discovery is crucial for entity-leveraging applications. However, existing studies suffer from several critical issues: (1) the input mentions may be out-of-vocabulary (OOV) and may come from a different semantic space of…

Artificial Intelligence · Computer Science 2021-04-02 Yiying Yang , Xi Yin , Haiqin Yang , Xingjian Fei , Hao Peng , Kaijie Zhou , Kunfeng Lai , Jianping Shen

Knowledge graph embedding (KGE) models are extensively studied for knowledge graph completion, yet their evaluation remains constrained by unrealistic benchmarks. Standard evaluation metrics rely on the closed-world assumption, which…

Machine Learning · Computer Science 2025-06-11 Nasim Shirvani-Mahdavi , Farahnaz Akrami , Chengkai Li

One of the fundamental problems in Artificial Intelligence is to perform complex multi-hop logical reasoning over the facts captured by a knowledge graph (KG). This problem is challenging, because KGs can be massive and incomplete. Recent…

Artificial Intelligence · Computer Science 2020-10-23 Hongyu Ren , Jure Leskovec

Knowledge graphs (KGs) are valuable for representing structured, interconnected information across domains, enabling tasks like semantic search, recommendation systems and inference. A pertinent challenge with KGs, however, is that many…

Computation and Language · Computer Science 2024-12-17 Haji Gul , Abdul Ghani Naim , Ajaz A. Bhat

Knowledge graph (KG) reasoning is becoming increasingly popular in both academia and industry. Conventional KG reasoning based on symbolic logic is deterministic, with reasoning results being explainable, while modern embedding-based…

Artificial Intelligence · Computer Science 2022-02-16 Wen Zhang , Jiaoyan Chen , Juan Li , Zezhong Xu , Jeff Z. Pan , Huajun Chen

Recent advances in neural networks have solved common graph problems such as link prediction, node classification, node clustering, node recommendation by developing embeddings of entities and relations into vector spaces. Graph embeddings…

Social and Information Networks · Computer Science 2021-11-19 Archit Parnami , Mayuri Deshpande , Anant Kumar Mishra , Minwoo Lee

Graph is an important data representation which occurs naturally in the real world applications \cite{goyal2018graph}. Therefore, analyzing graphs provides users with better insights in different areas such as anomaly detection…

Machine Learning · Computer Science 2024-05-06 Elika Bozorgi , Saber Soleimani , Sakher Khalil Alqaiidi , Hamid Reza Arabnia , Krzysztof Kochut

In recent years, knowledge graph embedding models have been successfully applied in the transductive setting to tackle various challenging tasks including link prediction, and query answering. Yet, the transductive setting does not allow…

Machine Learning · Computer Science 2024-10-10 Caglar Demir , N'Dah Jean Kouagou , Arnab Sharma , Axel-Cyrille Ngonga Ngomo

Knowledge graphs (KGs) are an important tool for representing complex relationships between entities in the biomedical domain. Several methods have been proposed for learning embeddings that can be used to predict new links in such graphs.…

Artificial Intelligence · Computer Science 2026-05-12 Daniel Daza , Dimitrios Alivanistos , Payal Mitra , Thom Pijnenburg , Michael Cochez , Paul Groth

We present an effective graph neural network (GNN)-based knowledge graph embedding model, which we name WGE, to capture entity- and relation-focused graph structures. Given a knowledge graph, WGE builds a single undirected entity-focused…

Computation and Language · Computer Science 2023-03-14 Vinh Tong , Dai Quoc Nguyen , Dinh Phung , Dat Quoc Nguyen

Graph embedding provides an efficient solution for graph analysis by converting the graph into a low-dimensional space which preserves the structure information. In contrast to the graph structure data, the i.i.d. node embedding can be…

Machine Learning · Computer Science 2017-05-16 Hongyun Cai , Vincent W. Zheng , Kevin Chen-Chuan Chang

Modeling of relation pattern is the core focus of previous Knowledge Graph Embedding works, which represents how one entity is related to another semantically by some explicit relation. However, there is a more natural and intuitive…

Computation and Language · Computer Science 2021-10-05 Ren Li , Yanan Cao , Qiannan Zhu , Xiaoxue Li , Fang Fang

Knowledge graph embedding (KGE) aims at learning powerful representations to benefit various artificial intelligence applications. Meanwhile, contrastive learning has been widely leveraged in graph learning as an effective mechanism to…

Artificial Intelligence · Computer Science 2023-06-14 Ke Liang , Yue Liu , Sihang Zhou , Wenxuan Tu , Yi Wen , Xihong Yang , Xiangjun Dong , Xinwang Liu

The autonomous driving (AD) industry is exploring the use of knowledge graphs (KGs) to manage the vast amount of heterogeneous data generated from vehicular sensors. The various types of equipped sensors include video, LIDAR and RADAR.…

Artificial Intelligence · Computer Science 2020-03-03 Ruwan Wickramarachchi , Cory Henson , Amit Sheth

Knowledge graph (KG) embedding seeks to learn vector representations for entities and relations. Conventional models reason over graph structures, but they suffer from the issues of graph incompleteness and long-tail entities. Recent…

Computation and Language · Computer Science 2022-09-16 Yang Liu , Zequn Sun , Guangyao Li , Wei Hu

Knowledge graphs (KGs) of real-world facts about entities and their relationships are useful resources for a variety of natural language processing tasks. However, because knowledge graphs are typically incomplete, it is useful to perform…

Computation and Language · Computer Science 2020-10-28 Dat Quoc Nguyen