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We present an introduction to RNA databases. The history and technology behind RNA databases is briefly discussed. We examine differing methods of data collection and curation, and discuss their impact on both the scope and accuracy of the…

Biomolecules · Quantitative Biology 2014-07-01 Marc P. Hoeppner , Lars E. Barquist , Paul P. Gardner

Transformer-based machine learning models have become an essential tool for many natural language processing (NLP) tasks since the introduction of the method. A common objective of these projects is to classify text data. Classification…

Computation and Language · Computer Science 2025-02-18 Zoltán Kmetty , Bence Kollányi , Krisztián Boros

While multilingual language models promise to bring the benefits of LLMs to speakers of many languages, gold-standard evaluation benchmarks in most languages to interrogate these assumptions remain scarce. The Universal NER project, now…

Efficient consistency maintenance of incomplete and dynamic real-life databases is a quality label for further data analysis. In prior work, we tackled the generic problem of database updating in the presence of tuple generating constraints…

Databases · Computer Science 2024-05-16 Jacques Chabin , Mirian Halfeld Ferrari , Nicolas Hiot , Dominique Laurent

Named Entity Recognition (NER) is a well-studied problem in NLP. However, there is much less focus on studying NER datasets, compared to developing new NER models. In this paper, we employed three simple techniques to detect annotation…

Computation and Language · Computer Science 2024-06-28 Gabriel Bernier-Colborne , Sowmya Vajjala

Four years after the last LISA meeting, the NASA Astrophysics Data System (ADS) finds itself in the middle of major changes to the infrastructure and contents of its database. In this paper we highlight a number of features of great…

Retrieval Augmented Generation (RAG) is widely employed to ground responses to queries on domain-specific documents. But do RAG implementations leave out important information when answering queries that need an integrated analysis of…

Information Retrieval · Computer Science 2025-01-24 Jingwei Ni , Tobias Schimanski , Meihong Lin , Mrinmaya Sachan , Elliott Ash , Markus Leippold

We discuss long-term preservation of and access to relational databases. The focus is on national archives and science data archives which have to ingest and integrate data from a broad spectrum of vendor-specific relational database…

Digital Libraries · Computer Science 2007-05-23 Stephan Heuscher , Stephan Jaermann , Peter Keller-Marxer , Frank Moehle

Manual annotation of textual documents is a necessary task when constructing benchmark corpora for training and evaluating machine learning algorithms. We created a comprehensive directory of annotation tools that currently includes 93…

Computation and Language · Computer Science 2020-10-15 Mariana Neves , Jurica Seva

We present OpenNER 1.0, a standardized collection of openly-available named entity recognition (NER) datasets. OpenNER contains 36 NER corpora that span 52 languages, human-annotated in varying named entity ontologies. We correct annotation…

Computation and Language · Computer Science 2025-12-19 Chester Palen-Michel , Maxwell Pickering , Maya Kruse , Jonne Sälevä , Constantine Lignos

Data curation is a field with origins in librarianship and archives, whose scholarship and thinking on data issues go back centuries, if not millennia. The field of machine learning is increasingly observing the importance of data curation…

Computers and Society · Computer Science 2025-01-06 Eshta Bhardwaj , Harshit Gujral , Siyi Wu , Ciara Zogheib , Tegan Maharaj , Christoph Becker

The UCR Time Series Archive - introduced in 2002, has become an important resource in the time series data mining community, with at least one thousand published papers making use of at least one data set from the archive. The original…

Maintenance is the last and the most critical phase of the software development life cycle. It involves debugging of errors and different types of enhancements which are requested by the user. Software reliability regarding maintenance is…

Software Engineering · Computer Science 2016-05-04 Ahmad Mateen , Muhammad Azeem Akbar

With the AI revolution in place, the trend for building automated systems to support professionals in different domains such as the open source software systems, healthcare systems, banking systems, transportation systems and many others…

Computation and Language · Computer Science 2024-06-21 Somnath Banerjee , Avik Dutta , Aaditya Agrawal , Rima Hazra , Animesh Mukherjee

Biologists are increasingly using databases for storing and managing their data. Biological databases typically consist of a mixture of raw data, metadata, sequences, annotations, and related data obtained from various sources. Current…

Databases · Computer Science 2007-05-23 Mohamed Y. Eltabakh , Mourad Ouzzani , Walid G. Aref

Tabular data is ubiquitous in real-world applications and abundant on the web, yet its annotation has traditionally required human labor, posing a significant scalability bottleneck for tabular machine learning. Our methodology can…

Machine Learning · Computer Science 2024-06-25 Yaojie Hu , Ilias Fountalis , Jin Tian , Nikolaos Vasiloglou

Recent progress in face detection (including keypoint detection), and recognition is mainly being driven by (i) deeper convolutional neural network architectures, and (ii) larger datasets. However, most of the large datasets are maintained…

Computer Vision and Pattern Recognition · Computer Science 2017-05-23 Ankan Bansal , Anirudh Nanduri , Carlos Castillo , Rajeev Ranjan , Rama Chellappa

Vulnerability databases are vital sources of information on emergent software security concerns. Security professionals, from system administrators to developers to researchers, heavily depend on these databases to track vulnerabilities and…

Cryptography and Security · Computer Science 2020-06-29 Afsah Anwar , Ahmed Abusnaina , Songqing Chen , Frank Li , David Mohaisen

The human annotations are imperfect, especially when produced by junior practitioners. Multi-expert consensus is usually regarded as golden standard, while this annotation protocol is too expensive to implement in many real-world projects.…

Computer Vision and Pattern Recognition · Computer Science 2022-07-11 Jiancheng Yang , Rui Shi , Udaranga Wickramasinghe , Qikui Zhu , Bingbing Ni , Pascal Fua

Soft-biometrics play an important role in face biometrics and related fields since these might lead to biased performances, threatens the user's privacy, or are valuable for commercial aspects. Current face databases are specifically…

Computer Vision and Pattern Recognition · Computer Science 2021-06-29 Philipp Terhörst , Daniel Fährmann , Jan Niklas Kolf , Naser Damer , Florian Kirchbuchner , Arjan Kuijper
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