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Linear operators and optimisation are at the core of many algorithms used in signal and image processing, remote sensing, and inverse problems. For small to medium-scale problems, existing software packages (e.g., MATLAB, Python numpy and…

Mathematical Software · Computer Science 2019-07-30 Matteo Ravasi , Ivan Vasconcelos

Motivation: Parameter estimation is a cornerstone of data-driven modeling in systems biology. Yet, constructing such problems in a reproducible and accessible manner remains challenging. The PEtab format has established itself as a powerful…

Quantitative Methods · Quantitative Biology 2025-11-17 Paul Jonas Jost , Frank T Bergmann , Daniel Weindl , Jan Hasenauer

We present a new version of the FIT3D and Pipe3D codes, two packages to derive properties of the stellar populations and the ionized emission lines from optical spectroscopy and integral field spectroscopy data respectively. The new codes…

The AiTLAS toolbox (Artificial Intelligence Toolbox for Earth Observation) includes state-of-the-art machine learning methods for exploratory and predictive analysis of satellite imagery as well as repository of AI-ready Earth Observation…

Computer Vision and Pattern Recognition · Computer Science 2022-01-24 Ivica Dimitrovski , Ivan Kitanovski , Panče Panov , Nikola Simidjievski , Dragi Kocev

Operator-splitting methods are widespread in the numerical solution of differential equations, especially the initial-value problems in ordinary differential equations that arise from a method-of-lines discretization of partial differential…

Numerical Analysis · Mathematics 2024-07-09 Victoria Guenter , Siqi Wei , Raymond J. Spiteri

Physical processes evolving in both time and space are often modeled using Partial Differential Equations (PDEs). Recently, it has been shown how stability analysis and control of coupled PDEs in a single spatial variable can be more…

Analysis of PDEs · Mathematics 2026-05-20 Declan S. Jagt , Matthew M. Peet

PYROBOCOP is a Python-based package for control, optimization and estimation of robotic systems described by nonlinear Differential Algebraic Equations (DAEs). In particular, the package can handle systems with contacts that are described…

Robotics · Computer Science 2022-03-21 Arvind Raghunathan , Devesh K. Jha , Diego Romeres

ISIM1s consists of a few MATLAB functions and a script that can be used to derive stabilizing impulsive controllers for delay differential equations. This document serves as both a manual and tutorial on the functionality of the ISIM1s…

Systems and Control · Electrical Eng. & Systems 2021-02-16 Kevin E. M. Church

Advanced deep learning-based approaches have been actively applied to forecast the spatiotemporal physical dynamics governed by partial differential equations (PDEs), which acts as a critical procedure in tackling many science and…

Machine Learning · Computer Science 2026-03-03 Siyang Li , Yize Chen , Yan Guo , Ming Huang , Hui Xiong

The combination of machine learning and physical laws has shown immense potential for solving scientific problems driven by partial differential equations (PDEs) with the promise of fast inference, zero-shot generalisation, and the ability…

Machine Learning · Computer Science 2024-09-11 Nacime Bouziani , David A. Ham , Ado Farsi

Outlier detection is an important task for various data mining applications. Current outlier detection techniques are often manually designed for specific domains, requiring large human efforts of database setup, algorithm selection, and…

Machine Learning · Computer Science 2020-03-13 Yuening Li , Daochen Zha , Praveen Kumar Venugopal , Na Zou , Xia Hu

We present a family of Python modules for the numerical integration of ordinary, delay, or stochastic differential equations. The key features are that the user enters the derivative symbolically and it is just-in-time-compiled, allowing…

Mathematical Software · Computer Science 2018-04-25 Gerrit Ansmann

We are delighted to see the recent development of physics-informed extreme learning machine (PIELM) for its higher computational efficiency and accuracy compared to other physics-informed machine learning (PIML) paradigms. Since a…

Machine Learning · Computer Science 2025-11-04 He Yang , Fei Ren , Francesco Calabro , Hai-Sui Yu , Xiaohui Chen , Pei-Zhi Zhuang

The iotools package provides a set of tools for Input/Output (I/O) intensive datasets processing in R (R Core Team, 2014). Efficent parsing methods are included which minimize copying and avoid the use of intermediate string representations…

Computation · Statistics 2016-04-08 Taylor Arnold , Michael Kane , Simon Urbanek

Building a successful AI copilot requires a systematic approach. This paper is divided into two sections, covering the design and evaluation of a copilot respectively. A case study of developing copilot templates for the retail domain by…

Human-Computer Interaction · Computer Science 2024-07-16 Michal Furmakiewicz , Chang Liu , Angus Taylor , Ilya Venger

This paper describes PyOED, a highly extensible scientific package that enables developing and testing model-constrained optimal experimental design (OED) for inverse problems. Specifically, PyOED aims to be a comprehensive Python toolkit…

Mathematical Software · Computer Science 2023-12-20 Abhijit Chowdhary , Shady E. Ahmed , Ahmed Attia

Systems modeled by partial differential equations (PDEs) are at least as ubiquitous as systems that are by nature finite-dimensional and modeled by ordinary differential equations (ODEs). And yet, systematic and readily usable…

Optimization and Control · Mathematics 2025-09-11 Rafael Vazquez , Jean Auriol , Federico Bribiesca-Argomedo , Miroslav Krstic

In this paper, we present the Partial Integral Equation (PIE) representation of linear Partial Differential Equations (PDEs) in one spatial dimension, where the PDE has spatial integral terms appearing in the dynamics and the boundary…

Numerical Analysis · Mathematics 2022-12-19 Sachin Shivakumar , Amritam Das , Matthew Peet

In this paper, we present solvable, convex formulations of $H_2$-optimal state estimation and state-feedback control problems for a general class of linear Partial Differential Equations (PDEs) with one spatial dimension. These convex…

Optimization and Control · Mathematics 2024-04-29 Sachin Shivakumar , Matthew Peet

Multi-objective evolutionary algorithms (MOEAs) have emerged as powerful tools for solving complex optimization problems characterized by multiple, often conflicting, objectives. While advancements have been made in computational efficiency…

Neural and Evolutionary Computing · Computer Science 2024-08-09 Zherui Zhang , Fan Yang , Ran Cheng , Yuxin Ma