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Phylogenetic analyses of gene expression have great potential for addressing a wide range of questions. These analyses will, for example, identify genes that have evolutionary shifts in expression that are correlated with evolutionary…

Populations and Evolution · Quantitative Biology 2014-01-14 Casey W. Dunn , Xi Luo , Zhijin Wu

Feature construction can substantially improve the accuracy of Machine Learning (ML) algorithms. Genetic Programming (GP) has been proven to be effective at this task by evolving non-linear combinations of input features. GP additionally…

Neural and Evolutionary Computing · Computer Science 2020-01-13 Marco Virgolin , Tanja Alderliesten , Peter A. N. Bosman

This paper presents the Embedding Pose Graph (EPG), an innovative method that combines the strengths of foundation models with a simple 3D representation suitable for robotics applications. Addressing the need for efficient spatial…

Robotics · Computer Science 2024-11-15 Hugues Thomas , Mouli Sivapurapu , Jian Zhang

Combining multiple audio features can improve the performance of music tagging, but common deep learning-based feature fusion methods often lack interpretability. To address this problem, we propose a Genetic Programming (GP) pipeline that…

Finding balanced, highly nonlinear Boolean functions is a difficult problem where it is not known what nonlinearity values are possible to be reached in general. At the same time, evolutionary computation is successfully used to evolve…

Neural and Evolutionary Computing · Computer Science 2022-02-18 Claude Carlet , Marko Djurasevic , Domagoj Jakobovic , Luca Mariot , Stjepan Picek

Designing plausible network models typically requires scholars to form a priori intuitions on the key drivers of network formation. Oftentimes, these intuitions are supported by the statistical estimation of a selection of network evolution…

Social and Information Networks · Computer Science 2019-07-01 Telmo Menezes , Camille Roth

Large language models (LLMs) excel at program synthesis, yet their ability to produce symbolic graphics programs (SGPs) that render into precise visual content remains underexplored. We study symbolic graphics programming, where the goal is…

Computer Vision and Pattern Recognition · Computer Science 2025-09-08 Yamei Chen , Haoquan Zhang , Yangyi Huang , Zeju Qiu , Kaipeng Zhang , Yandong Wen , Weiyang Liu

Generative adversarial networks (GANs) have been successfully used for considerable computer vision tasks, especially the image-to-image translation. However, generators in these networks are of complicated architectures with large number…

Computer Vision and Pattern Recognition · Computer Science 2019-07-26 Han Shu , Yunhe Wang , Xu Jia , Kai Han , Hanting Chen , Chunjing Xu , Qi Tian , Chang Xu

Many statistical problems involve optimization over a discrete parameter space having an unknown dimension. In such settings, gradient-based methods often fail due to the non-differentiability of the objective function or a non-convex or…

Applications · Statistics 2026-03-19 Mo Li , QiQi Lu , Robert Lund , Xueheng Shi

Neural approaches to program synthesis and understanding have proliferated widely in the last few years; at the same time graph based neural networks have become a promising new tool. This work aims to be the first empirical study comparing…

Software Engineering · Computer Science 2020-01-28 Austin P. Wright , Herbert Wiklicky

We demonstrate how a genetic algorithm solves the problem of minimizing the resources used for network coding, subject to a throughput constraint, in a multicast scenario. A genetic algorithm avoids the computational complexity that makes…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Minkyu Kim , Varun Aggarwal , Una-May O'Reilly , Muriel Medard , Wonsik Kim

We challenge black-box purely deep neural approaches for molecules and graph generation, which are limited in controllability and lack formal guarantees. We introduce Neuro-Symbolic Graph Generative Modeling (NSGGM), a neurosymbolic…

Machine Learning · Computer Science 2026-02-25 Chuqin Geng , Li Zhang , Mark Zhang , Haolin Ye , Ziyu Zhao , Xujie Si

Exponential random graph models (ERGMs), also known as p* models, have been utilized extensively in the social science literature to study complex networks and how their global structure depends on underlying structural components. However,…

Applications · Statistics 2015-05-19 Sean L. Simpson , Satoru Hayasaka , Paul J. Laurienti

Automated scientific discovery aims to improve scientific understanding through machine learning. A central approach in this field is symbolic regression, which uses genetic programming or sparse regression to learn interpretable…

Neural and Evolutionary Computing · Computer Science 2026-03-11 Sigur de Vries , Sander W. Keemink , Marcel A. J. van Gerven

The search for interpretable reinforcement learning policies is of high academic and industrial interest. Especially for industrial systems, domain experts are more likely to deploy autonomously learned controllers if they are…

Artificial Intelligence · Computer Science 2018-04-05 Daniel Hein , Steffen Udluft , Thomas A. Runkler

The electroencephalographic (EEG) signals provide highly informative data on brain activities and functions. However, their heterogeneity and high dimensionality may represent an obstacle for their interpretation. The introduction of a…

Neural and Evolutionary Computing · Computer Science 2023-10-26 Aurora Saibene , Francesca Gasparini

We provide a novel approach to construct generative models for graphs. Instead of using the traditional probabilistic models or deep generative models, we propose to instead find an algorithm that generates the data. We achieve this using…

Machine Learning · Computer Science 2023-04-26 Mihai Babiac , Karolis Martinkus , Roger Wattenhofer

Distinguishing the automorphic equivalence of nodes in a graph plays an essential role in many scientific domains, e.g., computational biologist and social network analysis. However, existing graph neural networks (GNNs) fail to capture…

Machine Learning · Computer Science 2021-11-10 Fengli Xu , Quanming Yao , Pan Hui , Yong Li

A bottleneck for multi-timescale dynamics is the computation of the potential energy surface (PES). We explore the use of genetic programming (GP) to symbolically regress a mapping of the saddle-point barriers from only a few calculated…

Materials Science · Physics 2009-11-10 Kumara Sastry , D. D. Johnson , David E. Goldberg , Pascal Bellon

Symbolic regression is emerging as a promising machine learning method for learning succinct underlying interpretable mathematical expressions directly from data. Whereas it has been traditionally tackled with genetic programming, it has…

Machine Learning · Computer Science 2025-01-14 Nour Makke , Sanjay Chawla
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