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Modern investigations of magnetic chemically peculiar stars reveal a variety of complex processes in their atmospheres. Realistic spectrum synthesis modelling of these objects has to take into account anomalous chemical composition, strong…

Astrophysics · Physics 2007-05-23 O. Kochukhov

Autonomous Raman instruments on Mars rovers, deep-sea landers, and field robots must interpret raw spectra distorted by fluorescence baselines, peak shifts, and limited ground-truth labels. Using curated subsets of the RRUFF database, we…

Machine Learning · Computer Science 2025-10-01 Deniz Soysal , Xabier García-Andrade , Laura E. Rodriguez , Pablo Sobron , Laura M. Barge , Renaud Detry

Accurate diagnosis of spitzoid tumors (ST) is critical to ensure a favorable prognosis and to avoid both under- and over-treatment. Epigenetic data, particularly DNA methylation, provide a valuable source of information for this task.…

Nucleus detection and classification (NDC) in histopathology analysis is a fundamental task that underpins a wide range of high-level pathology applications. However, existing methods heavily rely on labor-intensive nucleus-level…

Computer Vision and Pattern Recognition · Computer Science 2025-12-18 Zijiang Yang , Hanqing Chao , Bokai Zhao , Yelin Yang , Yunshuo Zhang , Dongmei Fu , Junping Zhang , Le Lu , Ke Yan , Dakai Jin , Minfeng Xu , Yun Bian , Hui Jiang

Detecting microbial biomarkers used to predict disease phenotypes and clinical outcomes is crucial for disease early-stage screening and diagnosis. Most methods for biomarker identification are linear-based, which is very limited as…

Quantitative Methods · Quantitative Biology 2021-09-29 Jian Jiang

Large catalogues are ubiquitous throughout astronomy, but most scientific analyses are carried out on smaller samples selected from these catalogues by chosen cuts on catalogued quantities. The selection function of that scientific sample -…

Instrumentation and Methods for Astrophysics · Physics 2022-01-05 Douglas Boubert , Andrew Everall

Pattern matching is a powerful tool which is part of many functional programming languages as well as computer algebra systems such as Mathematica. Among the existing systems, Mathematica offers the most expressive pattern matching.…

Symbolic Computation · Computer Science 2017-05-03 Manuel Krebber

The analysis of experimental results with Python often requires writing many code scripts which all need access to the same set of functions. In a common field of research, this set will be nearly the same for many users. The qspec Python…

Computational Physics · Physics 2025-03-18 Patrick Müller , Wilfried Nörtershäuser

Galaxy morphological classification is a fundamental aspect of galaxy formation and evolution studies. Various machine learning tools have been developed for automated pipeline analysis of large-scale surveys, enabling a fast search for…

Instrumentation and Methods for Astrophysics · Physics 2022-06-15 Yash Gondhalekar , Rafael S. de Souza , Ana L. Chies-Santos

Summary: The DynaSig-ML (Dynamical Signatures - Machine Learning) Python package allows the efficient, user-friendly exploration of 3D dynamics-function relationships in biomolecules, using datasets of experimental measures from large…

Biomolecules · Quantitative Biology 2022-07-08 Olivier Mailhot , Francois Major , Rafael Najmanovich

In the realm of Earth science, effective cloud property retrieval, encompassing cloud masking, cloud phase classification, and cloud optical thickness (COT) prediction, remains pivotal. Traditional methodologies necessitate distinct models…

Machine Learning · Computer Science 2024-07-08 Xingyan Li , Andrew M. Sayer , Ian T. Carroll , Xin Huang , Jianwu Wang

Information on the spectral types of stars is of great interest in view of the exploitation of space-based imaging surveys. In this article, we investigate the classification of stars into spectral types using only the shape of their…

Instrumentation and Methods for Astrophysics · Physics 2016-06-15 T. Kuntzer , M. Tewes , F. Courbin

This is an announcement of the first official release ver.1.0 of a Python system NZMATH for number theory. We overview all functions in NZMATH 1.0, show main properties after former report on NZMATH 0.5.0, and describe new features for…

Number Theory · Mathematics 2010-05-24 Satoru Tanaka , Naoki Ogura , Ken Nakamula , Tetsushi Matsui , Shigenori Uchiyama

[Abriged] Astronomical Wide Field Imaging performed with new large format CCD detectors poses data reduction problems of unprecedented scale which are difficult to deal with traditional interactive tools. We present here NExt (Neural…

Astrophysics · Physics 2009-10-31 S. Andreon , G. Gargiulo , G. Longo , R. Tagliaferri , N. Capuano

Nuclear magnetic resonance (NMR) spectroscopy is one of the leading techniques for protein studies. The method features a number of properties, allowing to explain macromolecular interactions mechanistically and resolve structures with…

Quantitative Methods · Quantitative Biology 2018-08-03 Piotr Klukowski , Adam Gonczarek

Background: The study of genome-scale metabolic models and their underlying networks is one of the most important fields in systems biology. The complexity of these models and their description makes the use of computational tools an…

Molecular Networks · Quantitative Biology 2012-12-03 D. Gamermann , A. Montagud , R. A. Jaime Infante , J. Triana , P. F. de Córdoba , J. F. Urchueguía

We introduce BSMArt, a python program for the exploration of parameter spaces of theories Beyond the Standard Model. Especially designed for use with the SARAH family of tools, it is also sufficiently flexible to be used with a wide variety…

High Energy Physics - Phenomenology · Physics 2023-01-04 Mark D. Goodsell , Ari Joury

The MIRS software for the modeling of ro-vibrational spectra of polyatomic molecules was considerably extended and improved. The original version (Nikitin, et al. JQSRT, 2003, pp. 239--249) was especially designed for separate or…

Atmospheric and Oceanic Physics · Physics 2012-05-15 Andrei Nikitin , Michaël Rey , Jean Paul Champion , Vladimir Tyuterev

CHEMSMART (Chemistry Simulation and Modeling Automation Toolkit) is an open-source, Python-based framework designed to streamline quantum chemistry workflows for homogeneous catalysis and molecular modeling. By integrating job preparation,…

Chemical Physics · Physics 2025-08-28 Xinglong Zhang , Huiwen Tan , Jingyi Liu , Zihan Li , Lewen Wang , Benjamin W. J. Chen

The dynamic mode decomposition (DMD) is a simple and powerful data-driven modeling technique that is capable of revealing coherent spatiotemporal patterns from data. The method's linear algebra-based formulation additionally allows for a…

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