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The ongoing explosion of genome sequence data is transforming how we reconstruct and understand the histories of biological systems. Across biological scales, from individual cells to populations and species, trees-based models provide a…

Populations and Evolution · Quantitative Biology 2025-12-08 Yun Deng , Shing H. Zhan , Yulin Zhang , Chao Zhang , Bingjie Chen

We present an algorithm for classification tasks on big data. Experiments conducted as part of this study indicate that the algorithm can be as accurate as ensemble methods such as random forests or gradient boosted trees. Unlike ensemble…

Machine Learning · Statistics 2017-10-27 Rajiv Sambasivan , Sourish Das

As scientific frameworks become sophisticated, so do their data structures. Current data structures are no longer simple in design and they have been progressively complicated. The typical trend in designing data structures in scientific…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-13 Millad Ghane , Sunita Chandrasekaran , Margaret S. Cheung

Synchronization of neural networks has been used for novel public channel protocols in cryptography. In the case of tree parity machines the dynamics of both bidirectional synchronization and unidirectional learning is driven by attractive…

Disordered Systems and Neural Networks · Physics 2007-11-01 Andreas Ruttor , Wolfgang Kinzel , Ido Kanter

Policy tree search is a family of tree search algorithms that use a policy to guide the search. These algorithms provide guarantees on the number of expansions required to solve a given problem that are based on the quality of the policy.…

Artificial Intelligence · Computer Science 2025-12-03 Jake Tuero , Michael Buro , Levi H. S. Lelis

Neighborhood algorithms may take a considerable percentage of computer time in discrete element methods (DEM). While the sort-and-sweep algorithm is ideal in some ways, as it only deal with particles whose relative positions change in one…

Computational Physics · Physics 2026-03-06 Dominik Krengel , Yuki Watanabe , Ko Kandori , Jian Chen , Hans-Georg Matuttis

Indexes provide a method to access data in databases quickly. It can improve the response speed of subsequent queries by building a complete index in advance. However, it also leads to a huge overhead of the continuous updating during…

Databases · Computer Science 2019-11-27 Gang Wu , Yidong Song , Guodong Zhao , Wei Sun , Donghong Han , Baiyou Qiao , Guoren Wang , Ye Yuan

Containment-based trees encompass various handy structures such as B+-trees, R-trees and M-trees. They are widely used to build data indexes, range-queryable overlays, publish/subscribe systems both in centralized and distributed contexts.…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-12-17 Evangelos Bampas , Anissa Lamani , Franck Petit , Mathieu Valero

A central challenge in scaling up explicit state-space search for large tasks is compactly representing the set of generated states. Tree databases, a data structure from model checking, require constant space per generated state in the…

Artificial Intelligence · Computer Science 2025-11-18 Oliver Joergensen , Dominik Drexler , Jendrik Seipp

We study the complexity of finding communication trees with the lowest possible completion time for rooted, irregular gather and scatter collective communication operations in fully connected, $k$-ported communication networks under a…

Computational Complexity · Computer Science 2018-11-28 Jesper Larsson Träff

In the theoretical study of distributed communication networks, "history trees" are a discrete structure that naturally models the concept that anonymous agents become distinguishable upon receiving different sets of messages from…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-02 Giovanni Viglietta

Adaptive binary search trees are a fundamental data structure for organizing hierarchical information. Their ability to dynamically adjust to access patterns makes them particularly valuable for building responsive and efficient networked…

Data Structures and Algorithms · Computer Science 2025-07-29 Maryam Shiran

Neuroscience has focused on the detailed implementation of computation, studying neural codes, dynamics and circuits. In machine learning, however, artificial neural networks tend to eschew precisely designed codes, dynamics or circuits in…

Neurons and Cognition · Quantitative Biology 2020-02-04 Adam Marblestone , Greg Wayne , Konrad Kording

Model performance is frequently reported only for the overall population under consideration. However, due to heterogeneity, overall performance measures often do not accurately represent model performance within specific subgroups. We…

Methodology · Statistics 2025-06-03 Ruotao Zhang , Constantine Gatsonis , Jon Steingrimsson

Tree-based models are among the most efficient machine learning techniques for data mining nowadays due to their accuracy, interpretability, and simplicity. The recent orthogonal needs for more data and privacy protection call for…

Cryptography and Security · Computer Science 2021-06-21 Sylvain Chatel , Apostolos Pyrgelis , Juan Ramon Troncoso-Pastoriza , Jean-Pierre Hubaux

Supervised learning algorithms generally assume the availability of enough memory to store their data model during the training and test phases. However, in the Internet of Things, this assumption is unrealistic when data comes in the form…

Machine Learning · Computer Science 2023-08-07 Martin Khannouz , Tristan Glatard

We investigate regression for variable length sequential data containing missing samples and introduce a novel tree architecture based on the Long Short-Term Memory (LSTM) networks. In our architecture, we employ a variable number of LSTM…

Machine Learning · Computer Science 2020-05-26 S. Onur Sahin , Suleyman S. Kozat

The rapid advancement of embedded multicore and many-core systems has revolutionized computing, enabling the development of high-performance, energy-efficient solutions for a wide range of applications. As models scale up in size, data…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-15 Ruhai Lin , Rui-Jie Zhu , Jason K. Eshraghian

The wealth of data being gathered about humans and their surroundings drives new machine learning applications in various fields. Consequently, more and more often, classifiers are trained using not only numerical data but also complex data…

Machine Learning · Computer Science 2022-04-13 Maciej Piernik , Dariusz Brzezinski , Pawel Zawadzki

Generating accurate digital tree models from scanned environments is invaluable for forestry, agriculture, and other outdoor industries in tasks such as identifying biomass, fall hazards and traversability, as well as digital applications…

Computer Vision and Pattern Recognition · Computer Science 2023-03-03 Thomas Lowe , Joshua Pinskier
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