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Detailed phenotype information is fundamental to accurate diagnosis and risk estimation of diseases. As a rich source of phenotype information, electronic health records (EHRs) promise to empower diagnostic variant interpretation. However,…

Machine Learning · Computer Science 2023-04-28 Shenghan Zhang , Haoxuan Li , Ruixiang Tang , Sirui Ding , Laila Rasmy , Degui Zhi , Na Zou , Xia Hu

Tree structures appear in many fields of the life sciences, including phylogenetics, developmental biology and nucleic acid structures. Trees can be used to represent RNA secondary structures, which directly relate to the function of…

Machine Learning · Computer Science 2026-01-22 Pengyu Liu , Mariel Vázquez , Nataša Jonoska

We propose a procedural fruit tree rendering framework, based on Blender and Python scripts allowing to generate quickly labeled dataset (i.e. including ground truth semantic segmentation). It is designed to train image analysis deep…

Computer Vision and Pattern Recognition · Computer Science 2019-07-11 Thomas Duboudin , Maxime Petit , Liming Chen

The hybrid model combines the physics-based primitive-equations model SPEEDY with a machine learning-based (ML-based) model component, while ERA5 reanalyses provide the presumed true states of the atmosphere. Six-hourly simulated noisy…

Chaotic Dynamics · Physics 2025-09-29 Dylan Elliott , Troy Arcomano , Istvan Szunyogh , Brian R. Hunt

Accurate crop yield prediction is crucial for sustainable agriculture and global food security. While existing methods are predominantly developed for single-crop prediction, they often struggle to generalize across diverse crop types,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-25 Yu Luo , Xiaogang Zhu , Shan Zeng , Wei Xiang , Thomas Francis Bishop , Zhiyong Wang , Kun Hu

Accurate prediction of wind power is essential for the grid integration of this intermittent renewable source and aiding grid planners in forecasting available wind capacity. Spatial differences lead to discrepancies in climatological data…

Machine Learning · Computer Science 2024-05-21 Md Saiful Islam Sajol , Md Shazid Islam , A S M Jahid Hasan , Md Saydur Rahman , Jubair Yusuf

Cold temperatures during fall and spring have the potential to cause frost damage to grapevines and other fruit plants, which can significantly decrease harvest yields. To help prevent these losses, farmers deploy expensive frost mitigation…

Machine Learning · Computer Science 2023-01-06 Aseem Saxena , Paola Pesantez-Cabrera , Rohan Ballapragada , Kin-Ho Lam , Markus Keller , Alan Fern

The calculation of thermodynamic properties of biochemical systems typically requires the use of resource-intensive molecular simulation methods. One example thereof is the thermodynamic profiling of hydration sites, i.e. high-probability…

Biomolecules · Quantitative Biology 2020-01-08 Ahmadreza Ghanbarpour , Amr H. Mahmoud , Markus A. Lill

Phylogenetic mixtures model the inhomogeneous molecular evolution commonly observed in data. The performance of phylogenetic reconstruction methods where the underlying data is generated by a mixture model has stimulated considerable recent…

Populations and Evolution · Quantitative Biology 2007-06-30 Frederick A. Matsen , Mike Steel

We present Collaborative Trees, a novel tree model designed for regression prediction, along with its bagging version, which aims to analyze complex statistical associations between features and uncover potential patterns inherent in the…

Methodology · Statistics 2024-05-21 Chien-Ming Chi

Two-part models and Tweedie generalized linear models (GLMs) have been used to model loss costs for short-term insurance contract. For most portfolios of insurance claims, there is typically a large proportion of zero claims that leads to…

Applications · Statistics 2020-06-11 Zhiyu Quan , Zhiguo Wang , Guojun Gan , Emiliano A. Valdez

In this paper, we introduce a collaborative training algorithm of balanced random forests with convolutional neural networks for domain adaptation tasks. In real scenarios, most domain adaptation algorithms face the challenges from noisy,…

Computer Vision and Pattern Recognition · Computer Science 2020-02-11 Jongbin Ryu , Jiun Bae , Jongwoo Lim

In numerical modeling of the Earth System, many processes remain unknown or ill represented (let us quote sub-grid processes, the dependence to unknown latent variables or the non-inclusion of complex dynamics in numerical models) but…

Data Analysis, Statistics and Probability · Physics 2019-03-19 Julien Brajard , Anastase Charantonis , Jérôme Sirven

One of the first beings affected by changes in the climate are trees, one of our most vital resources. In this study tree species interaction and the response to climate in different ecological environments is observed by applying a joint…

Populations and Evolution · Quantitative Biology 2019-10-14 Hyun Choi , Ali Sadeghian , Sergio Marconi , Ethan White , Daisy Zhe Wang

Learning processes by exploiting restricted domain knowledge is an important task across a plethora of scientific areas, with more and more hybrid training methods additively combining data-driven and model-based approaches. Although the…

Machine Learning · Computer Science 2025-01-17 Yann Claes , Vân Anh Huynh-Thu , Pierre Geurts

Dynamic regression trees are an attractive option for automatic regression and classification with complicated response surfaces in on-line application settings. We create a sequential tree model whose state changes in time with the…

Methodology · Statistics 2010-11-23 Matthew A. Taddy , Robert B. Gramacy , Nicholas G. Polson

In this work we combine representation learning capabilities of neural network with agricultural knowledge from experts to model environmental heat and drought stresses. We first design deterministic expert models which serve as a benchmark…

Machine Learning · Computer Science 2021-11-02 Kostadin Cvejoski , Jannis Schuecker , Anne-Katrin Mahlein , Bogdan Georgiev

Regression models for supervised learning problems with a continuous target are commonly understood as models for the conditional mean of the target given predictors. This notion is simple and therefore appealing for interpretation and…

Methodology · Statistics 2018-01-09 Torsten Hothorn , Achim Zeileis

We develop a framework for applying treewidth-based dynamic programming on graphs with "hybrid structure", i.e., with parts that may not have small treewidth but instead possess other structural properties. Informally, this is achieved by…

Data Structures and Algorithms · Computer Science 2019-08-28 Eduard Eiben , Robert Ganian , Thekla Hamm , O-joung Kwon

Weather forecasting centers currently rely on statistical postprocessing methods to minimize forecast error. This improves skill but can lead to predictions that violate physical principles or disregard dependencies between variables, which…

Atmospheric and Oceanic Physics · Physics 2023-05-23 Francesco Zanetta , Daniele Nerini , Tom Beucler , Mark A. Liniger
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