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Related papers: Crowding Effects during DNA Translocation in Nanop…

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Efficient readout of nitrogen-vacancy (NV) centers in diamond is crucial for various quantum information technologies. However, achieving high-fidelity, single-shot readout at room temperature remains challenging due to limited photon…

Advancing open atmosphere printing technologies to produce features in the nanoscale range has important and broad applications ranging from electronics, to photonics, plasmonics and biology. Recently an electrohydrodynamic printing regime…

Soft Condensed Matter · Physics 2016-10-05 Patrizia Richner , Stephan J. P. Kress , David J. Norris , Dimos Poulikakos

This paper presents experimental results about transport of dilute suspensions of nano-objects in silicon-glass micrometric and sub-micrometric channels. Two kinds of objects are used: solid, rigid latex beads and spherical capsule-shaped,…

We study a model for a protein searching for a target, using facilitated diffusion, on a DNA molecule confined in a finite volume. The model includes three distinct pathways for facilitated diffusion: (a) sliding - in which the protein…

Subcellular Processes · Quantitative Biology 2009-01-28 Michael Sheinman , Yariv Kafri

DNA has emerged as a promising alternative for long-term data storage due to its high capacity, durability, and low-energy potential. However, storing data in DNA presents several challenges. First, it requires complex and costly…

Other Quantitative Biology · Quantitative Biology 2025-11-20 Sara Al Sayyed , Aline Roumy , Thomas Maugey

This work focuses on the development of an analytical framework to study a diffusion-assisted molecular communication-based network of nano-machines (NMs) with a clustered initial deployment to detect a target in a three-dimensional (3D)…

Information Theory · Computer Science 2025-12-17 Nithin V. Sabu , Kaushlendra Pandey , Abhishek K. Gupta , Sameer S. M

The translocation of a macromolecule through a nanometer-sized pore is an interesting process with important applications in the development of biosensors for single--molecule analysis and in drug delivery and gene therapy. We have carried…

Statistical Mechanics · Physics 2009-09-29 Yves Lansac , Prabal K. Maiti , Matthew A. Glaser

The Doppler effect is one of the dominant broadening mechanisms in thermal vapor spectroscopy. For two-photon transitions one would naively expect the Doppler effect to cause a residual broadening, proportional to the wave-vector…

Quantum Physics · Physics 2007-08-14 O. Firstenberg , M. Shuker , A. Ben-Kish , D. R. Fredkin , N. Davidson , A. Ron

Single molecule detection has revolutionised the fields of chemistry and biology by offering powerful ways to study individual molecules under different scenarios. Nanophotonic structures, including plasmonic antennas, significantly…

Biological Physics · Physics 2022-01-31 Pamina M. Winkler , Thomas S. van Zanten , Satyajit Mayor , Maria F. Garcia-Parajo

We investigate the conformations of DNA-like stiff chains, characterized by contour length ($L$) and persistence length ($l_p$), in a variety of crowded environments containing mono disperse soft spherical (SS) and spherocylindrical (SC)…

Soft Condensed Matter · Physics 2016-12-28 Hongsuk Kang , Ngo Minh Toan , Changbong Hyeon , D. Thirumalai

Polymer materials with low water uptake exhibit a highly heterogeneous interior, characterized by water clusters in the form of nanodroplets and nanochannels. Here, based on our recent insights from computer simulations, we argue that water…

Soft Condensed Matter · Physics 2022-06-16 Matej Kanduč , Rafael Roa , Won Kyu Kim , Joachim Dzubiella

A nanocomposite film containing highly polarizable inclusions in a fluid background is explored when an external electric field is applied perpendicular to the planar film. For small electric fields, the induced dipole moments of the…

Soft Condensed Matter · Physics 2025-06-27 Elshad Allahyarov , Hartmut Löwen

Graphene nanoribbons display an imperfectly understood transport gap. We measure transport through nanoribbon devices of several lengths. In nanoribbons of length greater than or equal to 250 nm we observe transport through multiple quantum…

Mesoscale and Nanoscale Physics · Physics 2009-01-02 Kathryn Todd , Hung-Tao Chou , Sami Amasha , David Goldhaber-Gordon

Measurements of electron transfer rates as well as of charge transport characteristics in DNA produced a number of seemingly contradictory results, ranging from insulating behaviour to the suggestion that DNA is an efficient medium for…

Soft Condensed Matter · Physics 2007-05-23 R. Bulla , R. Gutierrez , G. Cuniberti

In the emerging field of DNA storage, data is encoded as DNA sequences and stored. The data is read out again by sequencing the stored DNA. Nanopore sequencing is a new sequencing technology that has many advantages over other methods; in…

Information Theory · Computer Science 2021-02-04 Reyna Hulett , Shubham Chandak , Mary Wootters

We consider the influence of electrostatic forces on driven translocation dynamics of a flexible polyelectrolyte being pulled through a nanopore by an external force on the head monomer. To this end, we augment the iso-flux tension…

Soft Condensed Matter · Physics 2020-07-07 Jalal Sarabadani , Sahin Buyukdagli , Tapio Ala-Nissila

Individual quantum emitters form a fundamental building block for emerging quantum technologies. Collective effects of such emitters might improve the performance of applications even further. When scaling materials to larger sizes,…

Optics · Physics 2022-06-29 Jonas Gutsche , Ashkan Zand , Marek Bültel , Artur Widera

Quantum sensing techniques have been successful in pushing the sensitivity limits in numerous fields, and hold great promise for scanning probes that study nano-scale devices and novel materials. However, forming a nano-scale qubit that is…

Mesoscale and Nanoscale Physics · Physics 2019-08-23 Ilya Khivrich , Shahal Ilani

We investigate the translocation of a single stranded DNA (ssDNA) through a pore, which fluctuates between two conformations, by using coupled master equations (ME). The probability density function (PDF) of the first passage times (FPT) of…

Subcellular Processes · Quantitative Biology 2007-05-23 O. Flomenbom , J. Klafter

We present a versatile setup for investigating the nanofluidic behavior of nanoparticles as a function of the gap distance between two confining surfaces. The setup is designed as an open system which operates with small amounts of…

Soft Condensed Matter · Physics 2017-01-17 Stefan Fringes , Felix Holzner , Armin W. Knoll