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Chemotaxis plays a crucial role in a variety of processes in biology and ecology. In many instances, processes involving chemical attraction take place in fluids. One of the most studied PDE models of chemotaxis is given by Keller-Segel…
In this paper, we consider the fast numerical solution of an optimal control formulation of the Keller--Segel model for bacterial chemotaxis. Upon discretization, this problem requires the solution of huge-scale saddle point systems to…
In this paper, we address a distributed control problem for a system of partial differential equations describing the evolution of a tumor that takes the biological mechanism of chemotaxis into account. The system describing the evolution…
We describe and analyze a finite element numerical scheme for the parabolic-parabolic Keller-Segel model. The scalar auxiliary variable method is used to retrieve the monotonic decay of the energy associated with the system at the discrete…
The phenomenon where cells with elongated protrusions, such as neurons, communicate by contacting other cells and arrange themselves appropriately is termed cell sorting through haptotaxis. This phenomenon is described by partial…
We study a regularized interacting particle method for computing aggregation patterns and near singular solutions of a Keller-Segal (KS) chemotaxis system in two and three space dimensions, then further develop DeepParticle (DP) method to…
In this paper, we improve the original Lagrange multiplier approach \cite{ChSh22,ChSh_II22} and introduce a new energy correction approach to construct a class of robust, positivity/bound-preserving, mass conserving and energy dissipative…
We exploit the existence and nonlinear stability of boundary spike/layer solutions of the Keller-Segel system with logarithmic singular sensitivity in the half space, where the physical zero-flux and Dirichlet boundary conditions are…
The purpose of this work is the study of \textit{chemotaxis} and how to model it through the equations of Keller-Segel. \textit{Chemotaxis} is a natural process which induces the organisms to direct their movement according to certain…
A class of parabolic-parabolic Keller-Segel systems with degenerate diffusion and volume filling is studied in a bounded domain subject to no-flux boundary conditions. The equations are derived from a multiphase fluid model. The interplay…
We investigate the one-dimensional Keller-Segel model where the diffusion is replaced by a non-local operator, namely the fractional diffusion with exponent $0<\alpha\leq 2$. We prove some features related to the classical two-dimensional…
A pathway-based mean-field theory (PBMFT) was recently proposed for E. coli chemotaxis in [G. Si, T. Wu, Q. Quyang and Y. Tu, Phys. Rev. Lett., 109 (2012), 048101]. In this paper, we derived a new moment system of PBMFT by using the moment…
Perhaps the most classical diffusion model for chemotaxis is the Keller-Segel system \begin{equation}\tag{$\ast$} \label{ks0} \left\{ \begin{aligned} u_t =&\; \Delta u - \nabla \cdot(u \nabla v) \quad in {\mathbb R}^2\times(0,\infty),\\ v…
Cells encounter a diverse array of physical and chemical signals as they navigate their natural surroundings. However, their response to the simultaneous presence of multiple cues remains elusive. Particularly, the impact of topography…
We study a system of two coupled nonlinear parabolic equations. It constitutes a variant of the Keller-Segel model for chemotaxis, i.e. it models the behaviour of a population of bacteria that interact by means of a signalling substance. We…
This manuscript deals with the three-dimensional version of a flux-limited Keller-Segel system coupled to the incompressible Stokes equations through transport and buoyancy. The main goal consists in verifying that within a certain…
The Keller-Segel (KS) chemotaxis system is used to describe the overall behavior of a collection of cells under the influence of chemotaxis. However, solving the KS chemotaxis system and generating its aggregation patterns remain…
In this paper, the well-posedness of two-dimensional signal-dependent Keller-Segel system and its mean-field derivation from a interacting particle system on the whole space are investigated. The signal dependence effect is reflected by the…
In this paper, we are mainly concerned with the well-posed problem of the fractional Keller--Segel system in the framework of variable Lebesgue spaces. Based on carefully examining the algebraical structure of the system, we reduced the…
The Cellular Potts Model (CPM) has been used for simulating various biological phenomena such as differential adhesion, fruiting body formation of the slime mold Dictyostelium discoideum, angiogenesis, cancer invasion, chondrogenesis in…