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Since the release of human genome sequences, one of the most important research issues is about indexing the genome sequences, and the suffix tree is most widely adopted for that purpose. The traditional suffix tree construction algorithms…

Databases · Computer Science 2015-05-20 Woong-Kee Loh , Yang-Sae Moon , Wookey Lee

Modern technological advances have expanded the scope of applications requiring analysis of large-scale datastreams that comprise multiple indefinitely long time series. There is an acute need for statistical methodologies that perform…

Methodology · Statistics 2021-11-03 Jingshen Wang , Lilun Du , Changliang Zou , Zhenke Wu

Advanced diffusion models (DMs) perform impressively in image super-resolution (SR), but the high memory and computational costs hinder their deployment. Binarization, an ultra-compression algorithm, offers the potential for effectively…

Computer Vision and Pattern Recognition · Computer Science 2024-11-01 Zheng Chen , Haotong Qin , Yong Guo , Xiongfei Su , Xin Yuan , Linghe Kong , Yulun Zhang

Dense prediction is a critical task in computer vision. However, previous methods often require extensive computational resources, which hinders their real-world application. In this paper, we propose BiDense, a generalized binary neural…

Computer Vision and Pattern Recognition · Computer Science 2024-11-22 Rui Yin , Haotong Qin , Yulun Zhang , Wenbo Li , Yong Guo , Jianjun Zhu , Cheng Wang , Biao Jia

This paper studies the problem of statistical inference for genetic relatedness between binary traits based on individual-level genome-wide association data. Specifically, under the high-dimensional logistic regression models, we define…

Methodology · Statistics 2022-10-06 Rong Ma , Zijian Guo , T. Tony Cai , Hongzhe Li

Community detection in citation networks offers a powerful approach to understanding knowledge flow and identifying core research areas within academic disciplines. This study focuses on knowledge source discovery in statistics by analyzing…

Methodology · Statistics 2025-09-01 Zicheng Xie , Rui Pan , Yan Zhang

Variable selection in ultra-high dimensional linear regression is often preceded by a screening step to significantly reduce the dimension. Here we develop a Bayesian variable screening method (BITS) guided by the posterior model…

Methodology · Statistics 2025-02-28 Run Wang , Somak Dutta , Vivekananda Roy

In this paper, we make the first attempt to apply the boundary integrated neural networks (BINNs) for the numerical solution of two-dimensional (2D) elastostatic and piezoelectric problems. BINNs combine artificial neural networks with the…

Computational Engineering, Finance, and Science · Computer Science 2023-08-03 Peijun Zhang , Chuanzeng Zhang , Yan Gu , Wenzhen Qu , Shengdong Zhao

Among community detection methods, spectral clustering enjoys two desirable properties: computational efficiency and theoretical guarantees of consistency. Most studies of spectral clustering consider only the edges of a network as input to…

Machine Learning · Statistics 2022-05-18 Jonathan Hehir , Xiaoyue Niu , Aleksandra Slavkovic

In this paper, we present a machine learning method for the discovery of analytic solutions to differential equations. The method utilizes an inherently interpretable algorithm, genetic programming based symbolic regression. Unlike…

Machine Learning · Computer Science 2023-02-08 Hongsup Oh , Roman Amici , Geoffrey Bomarito , Shandian Zhe , Robert Kirby , Jacob Hochhalter

Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

Genomics · Quantitative Biology 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Published studies have suggested the bias of automated face-based gender classification algorithms across gender-race groups. Specifically, unequal accuracy rates were obtained for women and dark-skinned people. To mitigate the bias of…

Computer Vision and Pattern Recognition · Computer Science 2022-08-18 Sreeraj Ramachandran , Ajita Rattani

While state-of-the-art models for breast cancer detection leverage multi-view mammograms for enhanced diagnostic accuracy, they often focus solely on visual mammography data. However, radiologists document valuable lesion descriptors that…

Computer Vision and Pattern Recognition · Computer Science 2024-11-19 Gil Ben-Artzi , Feras Daragma , Shahar Mahpod

In this study, we propose an innovative dynamic classification algorithm aimed at achieving zero missed detections and minimal false positives,acritical in safety-critical domains (e.g., medical diagnostics) where undetected cases risk…

Machine Learning · Computer Science 2025-06-02 Ziyuan Zhong , Junyang Zhou

This work introduces a novel framework for brain tumor segmentation leveraging pre-trained GANs and Unet architectures. By combining a global anomaly detection module with a refined mask generation network, the proposed model accurately…

Image and Video Processing · Electrical Eng. & Systems 2025-06-27 Qifei Cui , Xinyu Lu

Filtered diode array spectrometers are routinely employed to infer the temporal evolution of spectral power from x-ray sources, but uniquely extracting spectral content from a finite set of broad, spectrally overlapping channel spectral…

Computational Physics · Physics 2020-08-03 G. E. Kemp , M. S. Rubery , C. D. Harris , M. J. May , K. Widmann , R. F. Heeter , S. B. Libby , M. B. Schneider , B. E. Blue

Motivation: Seed filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify genomic variants of the donor. Read mappers 1) quickly…

DBSCAN and OPTICS are powerful algorithms for identifying clusters of points in domains where few assumptions can be made about the structure of the data. In this paper, we leverage these strengths and introduce a new algorithm, LINSCAN,…

Machine Learning · Computer Science 2026-04-15 Andrew Dennehy , Xiaoyu Zou , Shabnam J. Semnani , Yuri Fialko , Alexander Cloninger

Deep neural networks are highly effective at a range of computational tasks. However, they tend to be computationally expensive, especially in vision-related problems, and also have large memory requirements. One of the most effective…

Computer Vision and Pattern Recognition · Computer Science 2018-04-10 Ameya Prabhu , Vishal Batchu , Sri Aurobindo Munagala , Rohit Gajawada , Anoop Namboodiri

Extraordinary amounts of data are being produced in many branches of science. Proven statistical methods are no longer applicable with extraordinary large data sets due to computational limitations. A critical step in big data analysis is…

Methodology · Statistics 2019-06-27 HaiYing Wang , Min Yang , John Stufken