Related papers: OLS4: A new Ontology Lookup Service for a growing …
The project of the Ontology Web Search Engine is presented in this paper. The main purpose of this paper is to develop such a project that can be easily implemented. Ontology Web Search Engine is software to look for and index ontologies in…
Many ontologies have been developed in biology and these ontologies increasingly contain large volumes of formalized knowledge commonly expressed in the Web Ontology Language (OWL). Computational access to the knowledge contained within…
Biomedical researchers use ontologies to annotate their data with ontology terms, enabling better data integration and interoperability. However, the number, variety and complexity of current biomedical ontologies make it cumbersome for…
Searching for appropriate web services on the internet is becoming more and more laborious, because it depends on human processing and evaluating of the available web services in UDDI repositories. Furthermore, if the requester language is…
End users of recent biomedical information systems are often unaware of the storage structure and access mechanisms of the underlying data sources and can require simplified mechanisms for writing domain specific complex queries. This…
As todays world grows with the technology on the other hand it seems to be small with the World Wide Web. With the use of Internet more and more information can be search from the web. When Users fires a query they want relevancy in…
Ontology Matching (OM), is a critical task in knowledge integration, where aligning heterogeneous ontologies facilitates data interoperability and knowledge sharing. Traditional OM systems often rely on expert knowledge or predictive…
The ever-increasing amount of data in biomedical research, and in cancer research in particular, needs to be managed to support efficient data access, exchange and integration. Existing software infrastructures, such caGrid, support access…
Ontologies in the biomedical domain are numerous, highly specialized and very expensive to develop. Thus, a crucial prerequisite for ontology adoption and reuse is effective support for exploring and finding existing ontologies. Towards…
We introduce Open Deep Search (ODS) to close the increasing gap between the proprietary search AI solutions, such as Perplexity's Sonar Reasoning Pro and OpenAI's GPT-4o Search Preview, and their open-source counterparts. The main…
With the growth of data-oriented research in humanities, a large number of research datasets have been created and published through web services. However, how to discover, integrate and reuse these distributed heterogeneous research…
Generative artificial intelligence (AI), exemplified by the release of GPT-3.5 in 2022, has significantly advanced the potential applications of large language models (LLMs), including in the realms of ontology development and knowledge…
OLAF (Open Life Science Analysis Framework) is an open-source platform that enables researchers to perform bioinformatics analyses using natural language. By combining large language models (LLMs) with a modular agent-pipe-router…
This work presents the architecture used in the ongoing OntologyNavigator project. It is a research tool to help advanced learners to find adapted IT papers to create scientific bibliographies. The purpose is the use of an IT representation…
Ontologies are useful for automatic machine processing of domain knowledge as they represent it in a structured format. Yet, constructing ontologies requires substantial manual effort. To automate part of this process, large language models…
Many platforms for benchmarking optimization algorithms offer users the possibility of sharing their experimental data with the purpose of promoting reproducible and reusable research. However, different platforms use different data models…
Gene Ontology (GO) is the most important resource for gene function annotation. It provides a way to unify biological knowledge across different species via a dynamic and controlled vocabulary. GO is now widely represented in the Semantic…
The information retrieval systems that are present nowadays are mainly based on full text matching of keywords or topic based classification. This matching of keywords often returns a large number of irrelevant information and this does not…
Tools to explore scientific literature are essential for scientists, especially in biomedicine, where about a million new papers are published every year. Many such tools provide users the ability to search for specific entities (e.g.…
This paper outlines the LLMs4OL 2024, the first edition of the Large Language Models for Ontology Learning Challenge. LLMs4OL is a community development initiative collocated with the 23rd International Semantic Web Conference (ISWC) to…