Related papers: Generalized Orthogonal de Bruijn and Kautz Sequenc…
A universal cycle, or u-cycle, for a given set of words is a circular word that contains each word from the set exactly once as a contiguous subword. The celebrated de Bruijn sequences are a particular case of such a u-cycle, where a set in…
This paper presents a class of random orthogonal sequences associated with the number theoretic Hilbert transform. We present a constructive procedure for finding the random sequences for different modulus values. These random sequences…
We study properties of random subcomplexes of partitions returned by (a suitable form of) the Strong Hypergraph Regularity Lemma, which we call regular slices. We argue that these subcomplexes capture many important structural properties of…
A superpermutation is a sequence that contains every permutation of $n$ distinct symbols as a contiguous substring. For instance, a valid example for three symbols is a sequence that contains all six permutations. This paper introduces a…
Pseudo-random arrays and perfect maps are the two-dimensional analogs of M-sequences and de Bruijn sequences, respectively. We modify the definitions to be applied to codes. These codes are also the two-dimensional analogs of certain…
We investigate the structure of graphs of twin-width at most $1$, and obtain the following results: - Graphs of twin-width at most $1$ are permutation graphs. In particular they have an intersection model and a linear structure. - There is…
We consider quantum, nondterministic and probabilistic versions of known computational model Ordered Read-$k$-times Branching Programs or Ordered Binary Decision Diagrams with repeated test ($k$-QOBDD, $k$-NOBDD and $k$-POBDD). We show…
Converting a set of sequencing reads into a lossless compact data structure that encodes all the relevant biological information is a major challenge. The classical approaches are to build the string graph or the de Bruijn graph. Each has…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
The nodes of the de Bruijn graph B(d,3) consist of all strings of length 3, taken from an alphabet of size d, with edges between words which are distinct substrings of a word of length 4. We give an inductive characterization of the maximum…
A Barker sequence is a binary sequence for which all nontrivial aperiodic autocorrelations are either 0, 1 or -1. The only known Barker sequences have length 2, 3, 4, 5, 7, 11 or 13. It is an old conjecture that no longer Barker sequences…
The problem of reconstructing a sequence from the set of its length-$k$ substrings has received considerable attention due to its various applications in genomics. We study an uncoded version of this problem where multiple random sources…
The circular dictionary matching problem is an extension of the classical dictionary matching problem where every string in the dictionary is interpreted as a circular string: after reading the last character of a string, we can move back…
The theory of sequences, supported by many SMT solvers, can model program data types including bounded arrays and lists. Sequences are parameterized by the element data type and provide operations such as accessing elements, concatenation,…
Let $G$ be a group and $G_0 \subseteq G$ be a subset. A sequence over $G_0$ means a finite sequence of terms from $G_0$, where the order of elements is disregarded and the repetition of elements is allowed. A product-one sequence is a…
Each positive increasing integer sequence $\{a_n\}_{n\geq 0}$ can serve as a numeration system to represent each non-negative integer by means of suitable coefficient strings. We analyse the case of $k$-generalized Fibonacci sequences…
We recently introduced the graph invariant twin-width, and showed that first-order model checking can be solved in time $f(d,k)n$ for $n$-vertex graphs given with a witness that the twin-width is at most $d$, called $d$-contraction sequence…
A $k$-uniform tight cycle is a $k$-graph with a cyclic order of its vertices such that every $k$ consecutive vertices from an edge. We show that for $k\geq 3$, every red-blue edge-coloured complete $k$-graph on $n$ vertices contains $k$…
The purpose of this paper is to study the cyclic self orthogonal codes over $\mathbb{Z}_{p^m}$. After providing the generator polynomial of cyclic self orthogonal codes over $\mathbb{Z}_{p^m}$, we give the necessary and sufficient condition…
Frequency of letters in a symbolic sequence ${\bf u}$ over a finite alphabet is one of the basic characteristics of ${\bf u}$. The notion of $k$-balancedness captures the property that the number of any letter occurring in two arbitrary…