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We introduce GeNet, a method for shotgun metagenomic classification from raw DNA sequences that exploits the known hierarchical structure between labels for training. We provide a comparison with state-of-the-art methods Kraken and…
Deep learning-based graph generation approaches have remarkable capacities for graph data modeling, allowing them to solve a wide range of real-world problems. Making these methods able to consider different conditions during the generation…
This work illustrates potentials for recognition within {\em ad hoc} sensor networks if their nodes possess individual inter-related biologically inspired genetic codes. The work takes ideas from natural immune systems protecting organisms…
Malicious software is an integral part of cybercrime defense. Due to the growing number of malicious attacks and their target sources, detecting and preventing the attack becomes more challenging due to the assault's changing behavior. The…
Graph Neural Networks (GNNs) have achieved promising performance in various real-world applications. Building a powerful GNN model is not a trivial task, as it requires a large amount of training data, powerful computing resources, and…
The interface between stochastic analysis and machine learning is a rapidly evolving field, with path signatures - iterated integrals that provide faithful, hierarchical representations of paths - offering a principled and universal feature…
In modern collider experiments, the quest to explore fundamental interactions between elementary particles has reached unparalleled levels of precision. Signatures from particle physics detectors are low-level objects (such as energy…
With the rapid proliferation and increased sophistication of malicious software (malware), detection methods no longer rely only on manually generated signatures but have also incorporated more general approaches like machine learning…
Despite recent advances in Generative Adversarial Networks (GANs), with special focus to the Deepfake phenomenon there is no a clear understanding neither in terms of explainability nor of recognition of the involved models. In particular,…
Backdoor attacks pose a significant security risk to graph learning models. Backdoors can be embedded into the target model by inserting backdoor triggers into the training dataset, causing the model to make incorrect predictions when the…
Network inference is a rapidly advancing field, with new methods being proposed on a regular basis. Understanding the advantages and limitations of different network inference methods is key to their effective application in different…
Signed graphs model complex relationships through positive and negative edges, with widespread real-world applications. Given the sensitive nature of such data, selective removal mechanisms have become essential for privacy protection.…
Machine learning methods can detect complex relationships between variables, but usually do not exploit domain knowledge. This is a limitation because in many scientific disciplines, such as systems biology, domain knowledge is available in…
Deep learning-based techniques have achieved state-of-the-art performance on a wide variety of recognition and classification tasks. However, these networks are typically computationally expensive to train, requiring weeks of computation on…
Inferring the graph structure from observed data is a key task in graph machine learning to capture the intrinsic relationship between data entities. While significant advancements have been made in learning the structure of homogeneous…
Training machine learning models can be very expensive or even unaffordable. This may be, for example, due to data limitations, such as unavailability or being too large, or computational power limitations. Therefore, it is a common…
Biometric security is the cornerstone of modern identity verification and authentication systems, where the integrity and reliability of biometric samples is of paramount importance. This paper introduces AttackNet, a bespoke Convolutional…
Quantifying biomechanical properties of the human vasculature could deepen our understanding of cardiovascular diseases. Standard nonlinear regression in constitutive modeling requires considerable high-quality data and an explicit form of…
Transcriptional profiling on microarrays to obtain gene expressions has been used to facilitate cancer diagnosis. We propose a deep generative machine learning architecture (called DeepCancer) that learn features from unlabeled microarray…
A subgraph is constructed by using a subset of vertices and edges of a given graph. There exist many graph properties that are hereditary for subgraphs. Hence, researchers from different communities have paid a great deal of attention in…