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We introduce GeNet, a method for shotgun metagenomic classification from raw DNA sequences that exploits the known hierarchical structure between labels for training. We provide a comparison with state-of-the-art methods Kraken and…

Deep learning-based graph generation approaches have remarkable capacities for graph data modeling, allowing them to solve a wide range of real-world problems. Making these methods able to consider different conditions during the generation…

Machine Learning · Computer Science 2023-01-11 Faezeh Faez , Negin Hashemi Dijujin , Mahdieh Soleymani Baghshah , Hamid R. Rabiee

This work illustrates potentials for recognition within {\em ad hoc} sensor networks if their nodes possess individual inter-related biologically inspired genetic codes. The work takes ideas from natural immune systems protecting organisms…

Cryptography and Security · Computer Science 2009-12-31 Reinert Korsnes , Knut Ovsthus

Malicious software is an integral part of cybercrime defense. Due to the growing number of malicious attacks and their target sources, detecting and preventing the attack becomes more challenging due to the assault's changing behavior. The…

Cryptography and Security · Computer Science 2023-08-10 Mohammad Aziz , Ali Saeed Alfoudi

Graph Neural Networks (GNNs) have achieved promising performance in various real-world applications. Building a powerful GNN model is not a trivial task, as it requires a large amount of training data, powerful computing resources, and…

Machine Learning · Computer Science 2022-11-15 Jing Xu , Stefanos Koffas , Oguzhan Ersoy , Stjepan Picek

The interface between stochastic analysis and machine learning is a rapidly evolving field, with path signatures - iterated integrals that provide faithful, hierarchical representations of paths - offering a principled and universal feature…

Machine Learning · Statistics 2025-06-26 Csaba Tóth

In modern collider experiments, the quest to explore fundamental interactions between elementary particles has reached unparalleled levels of precision. Signatures from particle physics detectors are low-level objects (such as energy…

Instrumentation and Detectors · Physics 2024-07-16 Baran Hashemi , Claudius Krause

With the rapid proliferation and increased sophistication of malicious software (malware), detection methods no longer rely only on manually generated signatures but have also incorporated more general approaches like machine learning…

Machine Learning · Computer Science 2020-01-24 Felipe N. Ducau , Ethan M. Rudd , Tad M. Heppner , Alex Long , Konstantin Berlin

Despite recent advances in Generative Adversarial Networks (GANs), with special focus to the Deepfake phenomenon there is no a clear understanding neither in terms of explainability nor of recognition of the involved models. In particular,…

Computer Vision and Pattern Recognition · Computer Science 2022-04-12 Luca Guarnera , Oliver Giudice , Matthias Niessner , Sebastiano Battiato

Backdoor attacks pose a significant security risk to graph learning models. Backdoors can be embedded into the target model by inserting backdoor triggers into the training dataset, causing the model to make incorrect predictions when the…

Cryptography and Security · Computer Science 2023-08-09 Zihan Guan , Mengnan Du , Ninghao Liu

Network inference is a rapidly advancing field, with new methods being proposed on a regular basis. Understanding the advantages and limitations of different network inference methods is key to their effective application in different…

Molecular Networks · Quantitative Biology 2016-09-15 Narsis A. Kiani , Hector Zenil , Jakub Olczak , Jesper Tegnér

Signed graphs model complex relationships through positive and negative edges, with widespread real-world applications. Given the sensitive nature of such data, selective removal mechanisms have become essential for privacy protection.…

Machine Learning · Computer Science 2025-11-19 Junpeng Zhao , Lin Li , Kaixi Hu , Kaize Shi , Jingling Yuan

Machine learning methods can detect complex relationships between variables, but usually do not exploit domain knowledge. This is a limitation because in many scientific disciplines, such as systems biology, domain knowledge is available in…

Artificial Intelligence · Computer Science 2023-07-31 Bastian Pfeifer , Hubert Baniecki , Anna Saranti , Przemyslaw Biecek , Andreas Holzinger

Deep learning-based techniques have achieved state-of-the-art performance on a wide variety of recognition and classification tasks. However, these networks are typically computationally expensive to train, requiring weeks of computation on…

Cryptography and Security · Computer Science 2019-03-13 Tianyu Gu , Brendan Dolan-Gavitt , Siddharth Garg

Inferring the graph structure from observed data is a key task in graph machine learning to capture the intrinsic relationship between data entities. While significant advancements have been made in learning the structure of homogeneous…

Machine Learning · Computer Science 2025-03-13 Keyue Jiang , Bohan Tang , Xiaowen Dong , Laura Toni

Training machine learning models can be very expensive or even unaffordable. This may be, for example, due to data limitations, such as unavailability or being too large, or computational power limitations. Therefore, it is a common…

Computer Vision and Pattern Recognition · Computer Science 2024-12-12 Mohamed E. Hussein , Sudharshan Subramaniam Janakiraman , Wael AbdAlmageed

Biometric security is the cornerstone of modern identity verification and authentication systems, where the integrity and reliability of biometric samples is of paramount importance. This paper introduces AttackNet, a bespoke Convolutional…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Oleksandr Kuznetsov , Dmytro Zakharov , Emanuele Frontoni , Andrea Maranesi

Quantifying biomechanical properties of the human vasculature could deepen our understanding of cardiovascular diseases. Standard nonlinear regression in constitutive modeling requires considerable high-quality data and an explicit form of…

Machine Learning · Computer Science 2023-09-26 Minglang Yin , Zongren Zou , Enrui Zhang , Cristina Cavinato , Jay D. Humphrey , George Em Karniadakis

Transcriptional profiling on microarrays to obtain gene expressions has been used to facilitate cancer diagnosis. We propose a deep generative machine learning architecture (called DeepCancer) that learn features from unlabeled microarray…

Artificial Intelligence · Computer Science 2016-12-14 Rajendra Rana Bhat , Vivek Viswanath , Xiaolin Li

A subgraph is constructed by using a subset of vertices and edges of a given graph. There exist many graph properties that are hereditary for subgraphs. Hence, researchers from different communities have paid a great deal of attention in…

Combinatorics · Mathematics 2023-06-06 Kai Siong Yow , Ningyi Liao , Siqiang Luo , Reynold Cheng , Chenhao Ma , Xiaolin Han