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Isolation is a concept from the world of clique enumeration that is mostly used to model communities that do not have much contact to the outside world. Herein, a clique is considered isolated if it has few edges connecting it to the rest…

Data Structures and Algorithms · Computer Science 2021-03-05 Hendrik Molter , Rolf Niedermeier , Malte Renken

Cellular functions are based on the complex interplay of proteins, therefore the structure and dynamics of these protein-protein interaction (PPI) networks are the key to the functional understanding of cells. In the last years, large-scale…

Molecular Networks · Quantitative Biology 2013-03-27 Yuliang Jin , Dmitrij Turaev , Thomas Weinmaier , Thomas Rattei , Hernan A. Makse

It has recently been demonstrated that many biological networks exhibit a scale-free topology where the probability of observing a node with a certain number of edges (k) follows a power law: i.e. p(k) ~ k^-g. This observation has been…

Molecular Networks · Quantitative Biology 2009-11-11 Eric J. Deeds , Orr Ashenberg , Eugene I. Shakhnovich

A bredge (bridge-edge) is an edge whose deletion would split the network component on which it resides into two components. Bredges are vulnerable links that play an important role in network collapse processes, which may result from node…

Disordered Systems and Neural Networks · Physics 2020-09-09 Haggai Bonneau , Ofer Biham , Reimer Kühn , Eytan Katzav

This Letter introduces a generalization of known duplication-divergence models for growing random graphs. This general duplication-divergence model includes a new coupled divergence asymmetry rate, which allows to obtain the structure of…

Statistical Mechanics · Physics 2024-12-04 Dario Borrelli

We introduce a new class of latent process models for dynamic relational network data with the goal of detecting time-dependent structure. Network data are often observed over time, and static network models for such data may fail to…

Methodology · Statistics 2013-11-15 Lucy F. Robinson , Carey E. Priebe

This paper proposes a discrimination technique for vertices in a weighted network. We assume that the edge weights and adjacencies in the network are conditionally independent and that both sources of information encode class membership…

Machine Learning · Statistics 2019-06-10 Hayden Helm , Joshua Vogelstein , Carey Priebe

Real-life networks often encounter vertex dysfunctions, which are usually followed by recoveries after appropriate maintenances. In this paper we present our research on a model of scale-free networks whose vertices are regularly removed…

Physics and Society · Physics 2013-10-08 Linjun Li , Xiangwen Wang

Inspired by scientific collaboration networks, especially our empirical analysis of the network of econophysicists, an evolutionary model for weighted networks is proposed. Both degree-driven and weight-driven models are considered.…

Disordered Systems and Neural Networks · Physics 2007-05-23 Menghui Li , Jinshan Wu , Dahui Wang , Tao Zhou , Zengru Di , Ying Fan

The study of complex networks is a significant development in modern science, and has enriched the social sciences, biology, physics, and computer science. Models and algorithms for such networks are pervasive in our society, and impact…

Machine Learning · Computer Science 2022-06-08 C. Seshadhri , Aneesh Sharma , Andrew Stolman , Ashish Goel

Two different types of directed networks are investigated, transcriptional regulation networks and neural networks. The directed network structure are studied and also shown to reflect the different processes taking place on the networks.…

Disordered Systems and Neural Networks · Physics 2016-08-16 Andreas Grönlund

We consider connectivity properties of certain i.i.d. random environments on $\Z^d$, where at each location some steps may not be available. Site percolation and oriented percolation can be viewed as special cases of the models we consider.…

Probability · Mathematics 2018-11-27 Mark Holmes , Thomas S. Salisbury

The surrounding of a vertex in a network can be more or less symmetric. We derive measures of a specific kind of symmetry of a vertex which we call degree symmetry -- the property that many paths going out from a vertex have overlapping…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Petter Holme

We consider Susceptible-Infected-Recovered (SIR) models on dense dynamic random graphs, in which the joint dynamics of vertices and edges are co-evolutionary, i.e., they influence each other bidirectionally. In particular, edges appear and…

Probability · Mathematics 2026-02-17 Simone Baldassarri , Peter Braunsteins , Frank den Hollander , Michel Mandjes

A random graph model with prescribed degree distribution and degree dependent edge weights is introduced. Each vertex is independently equipped with a random number of half-edges and each half-edge is assigned an integer valued weight…

Probability · Mathematics 2015-05-28 Tom Britton , Maria Deijfen , Fredrik Liljeros

Let $X_1,X_2,...$ be an infinite sequence of i.i.d. random vectors distributed exponentially with parameter $\lam .$ For each $y$ and $n\geq 1,$ form a graph $G_n(y)$ with vertex set $V_n = \{X_1,...,X_n\},$ two vertices are connected if…

Probability · Mathematics 2007-05-23 Bhupendra Gupta

We prove that, for every set of $n$ points $\mathcal{P}$ in $\mathbb{R}^2$, a random plane graph drawn on $\mathcal{P}$ is expected to contain less than $n/10.18$ isolated vertices. In the other direction, we construct a point set where the…

Combinatorics · Mathematics 2024-11-14 Neely Lovvorn , Oscar Murillo-Espinoza , Adam Sheffer

Gene covariation networks are commonly used to study biological processes. The inference of gene covariation networks from observational data can be challenging, especially considering the large number of players involved and the small…

Molecular Networks · Quantitative Biology 2019-04-17 Anatoly Yambartsev , Michael Perlin , Yevgeniy Kovchegov , Natalia Shulzhenko , Karina L. Mine , Xiaoxi Dong , Andrey Morgun

The properties of certain networks are determined by hidden variables that are not explicitly measured. The conditional probability (propagator) that a vertex with a given value of the hidden variable is connected to k of other vertices…

Quantitative Methods · Quantitative Biology 2009-11-13 Gerald A. Miller , Yi Y. Shi , Hong Qian , Karol Bomsztyk

Power law distribution is common in real-world networks including online social networks. Many studies on complex networks focus on the characteristics of vertices, which are always proved to follow the power law. However, few researches…

Social and Information Networks · Computer Science 2015-06-12 Xiaohan Wang , Zhaoqun Chen , Pengfei Liu , Yuantao Gu