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Software is now a vital scientific instrument, providing the tools for data collection and analysis across disciplines from bioinformatics and computational physics, to the humanities. The software used in research is often home-grown and…

Software Engineering · Computer Science 2019-03-15 Mario Rosado de Souza , Robert Haines , Markel Vigo , Caroline Jay

Numerical algorithms and computational tools are instrumental in navigating and addressing complex simulation and data processing tasks. The exponential growth of metadata and parameter-driven simulations has led to an increasing demand for…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-02 Pavan L. Veluvali , Jan Heiland , Peter Benner

In recent years, digital object management practices to support findability, accessibility, interoperability, and reusability (FAIR) have begun to be adopted across a number of data-intensive scientific disciplines. These digital objects…

High Energy Physics - Experiment · Physics 2022-11-29 Avik Roy

In today's world, we need to ensure that AI systems are fair and unbiased. Our study looked at tools designed to test the fairness of software to see if they are practical and easy for software developers to use. We found that while some…

Software Engineering · Computer Science 2024-09-05 Thanh Nguyen , Luiz Fernando de Lima , Maria Teresa Badassarre , Ronnie de Souza Santos

Neuroscience research has expanded dramatically over the past 30 years by advancing standardization and tool development to support rigor and transparency. Consequently, the complexity of the data pipeline has also increased, hindering…

The way science is currently practiced shows conclusions but hides how they were reached. Researchers work privately, polish their results, publish a finished paper, and defend it. Errors are punished by retraction rather than corrected by…

Digital Libraries · Computer Science 2026-04-14 Sergey V. Samsonau

Since their proposal in 2016, the FAIR principles have been largely discussed by different communities and initiatives involved in the development of infrastructures to enhance support for data findability, accessibility, interoperability,…

Software now lies at the heart of scholarly research. Here we argue that as well as being important from a methodological perspective, software should, in many instances, be recognised as an output of research, equivalent to an academic…

Computers and Society · Computer Science 2021-12-23 Caroline Jay , Robert Haines , Daniel S. Katz

Numerous Machine Learning (ML) bias-related failures in recent years have led to scrutiny of how companies incorporate aspects of transparency and accountability in their ML lifecycles. Companies have a responsibility to monitor ML…

Computers and Society · Computer Science 2021-02-16 Emily Dodwell , Cheryl Flynn , Balachander Krishnamurthy , Subhabrata Majumdar , Ritwik Mitra

Research software is essential to modern science, yet many research-performing organisations lack coherent policies to support its development, sustainability, and recognition. Despite its central role in research outcomes, research…

Software Engineering · Computer Science 2025-11-27 Michelle Barker , Jeremy Cohen , Pedro Hernández Serrano , Daniel S. Katz , Kim Martin , Dan Rudmann , Hugh Shanahan

The FAIR principles are globally accepted guidelines for improved data management practices with the potential to align data spaces on a global scale. In practice, this is only marginally achieved through the different ways in which…

Databases · Computer Science 2025-05-15 Nicolas Blumenroehr , Philipp-Joachim Ost , Felix Kraus , Achim Streit

Big data repositories from online learning platforms such as Massive Open Online Courses (MOOCs) represent an unprecedented opportunity to advance research on education at scale and impact a global population of learners. To date, such…

Software Engineering · Computer Science 2018-08-23 Josh Gardner , Christopher Brooks , Juan Miguel L. Andres , Ryan Baker

The development of a knowledge repository for climate science data is a multidisciplinary effort between the domain experts (climate scientists), data engineers whos skills include design and building a knowledge repository, and machine…

Digital Libraries · Computer Science 2023-04-13 Mark Roantree , Branislava Lalic , Stevan Savic , Dragan Milosevic , Michael Scriney

Software is foundationally important to scientific and social progress, however, traditional acknowledgment of the use of others' work has not adapted in step with the rapid development and use of software in research. This report outlines…

Digital Libraries · Computer Science 2023-02-16 Daina Bouquin , Ana Trisovic , Oliver Bertuch , Elena Colón-Marrero

Software testing ensures that a system functions correctly, meets specified requirements, and maintains high quality. As artificial intelligence and machine learning (ML) technologies become integral to software systems, testing has evolved…

Software Engineering · Computer Science 2025-07-29 Ronnie de Souza Santos , Matheus de Morais Leca , Reydne Santos , Cleyton Magalhaes

Fairness--the absence of unjustified bias--is a core principle in the development of Artificial Intelligence (AI) systems, yet it remains difficult to assess and enforce. Current approaches to fairness testing in large language models…

Software Engineering · Computer Science 2026-01-13 Miguel Romero-Arjona , José A. Parejo , Juan C. Alonso , Ana B. Sánchez , Aitor Arrieta , Sergio Segura

In the rapidly evolving field of bioimaging, the integration and orchestration of Findable, Accessible, Interoperable, and Reusable (FAIR) image analysis workflows remains a challenge. We introduce BIOMERO, a bridge connecting OMERO, a…

Software Engineering · Computer Science 2024-07-26 Torec T. Luik , Rodrigo Rosas-Bertolini , Eric A. J. Reits , Ron A. Hoebe , Przemek M. Krawczyk

Software development relies heavily on traceability links between various software artifacts to ensure quality and facilitate maintenance. While automated traceability recovery techniques have advanced for different artifact pairs, the…

Software Engineering · Computer Science 2026-03-18 Zhifei Chen , Lata Yi , Liming Nie , Yangyang Zhao , Hao Liu , Yiqing Shi , Wei Song

A multitude of work has shown that machine learning-based medical diagnosis systems can be biased against certain subgroups of people. This has motivated a growing number of bias mitigation algorithms that aim to address fairness issues in…

Machine Learning · Computer Science 2023-02-21 Yongshuo Zong , Yongxin Yang , Timothy Hospedales

The deployment of biased machine learning (ML) models has resulted in adverse effects in crucial sectors such as criminal justice and healthcare. To address these challenges, a diverse range of machine learning fairness interventions have…

Software Engineering · Computer Science 2025-07-10 Sadia Afrin Mim , Fatema Tuz Zohra , Justin Smith , Brittany Johnson
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