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Improved software discovery is a prerequisite for greater software reuse: after all, if someone cannot find software for a particular task, they cannot reuse it. Understanding people's approaches and preferences when they look for software…

Computers and Society · Computer Science 2018-05-30 Michael Hucka , Matthew J. Graham

In computational science and in computer science, research software is a central asset for research. Computational science is the application of computer science and software engineering principles to solving scientific problems, whereas…

Software Engineering · Computer Science 2019-08-19 Wilhelm Hasselbring , Leslie Carr , Simon Hettrick , Heather Packer , Thanassis Tiropanis

The field of deep learning has witnessed significant breakthroughs, spanning various applications, and fundamentally transforming current software capabilities. However, alongside these advancements, there have been increasing concerns…

Machine Learning · Computer Science 2025-05-07 Nikita Ravi , Abhinav Goel , James C. Davis , George K. Thiruvathukal

Context: Research software is essential for developing advanced tools and models to solve complex research problems and drive innovation across domains. Therefore, it is essential to ensure its correctness. Software testing plays a vital…

Software Engineering · Computer Science 2025-01-30 Nasir U. Eisty , Upulee Kanewala , Jeffrey C. Carver

The relevance of code comprehension in a developer's daily work was recognized more than 40 years ago. Consequently, many experiments were conducted to find out how developers could be supported during code comprehension and which code…

Software Engineering · Computer Science 2024-06-27 Marvin Wyrich , Justus Bogner , Stefan Wagner

As research increasingly relies on computational methods, the reliability of scientific results depends on the quality, reproducibility, and transparency of research software. Ensuring these qualities is critical for scientific integrity…

Software Engineering · Computer Science 2025-10-14 Evan Eisinger , Michael A. Heroux

Context: Writing Clean Code understandable by other collaborators has become crucial to enhancing collaboration and productivity. However, very little is known regarding whether developers agree with Clean Code Principles and how they apply…

Software Engineering · Computer Science 2022-08-16 Kevin Ljung , Javier Gonzalez-Huerta

Measuring and evaluating source code similarity is a fundamental software engineering activity that embraces a broad range of applications, including but not limited to code recommendation, duplicate code, plagiarism, malware, and smell…

Software Engineering · Computer Science 2023-06-29 Morteza Zakeri-Nasrabadi , Saeed Parsa , Mohammad Ramezani , Chanchal Roy , Masoud Ekhtiarzadeh

Ensuring the reproducibility of scientific work is crucial as it allows the consistent verification of scientific claims and facilitates the advancement of knowledge by providing a reliable foundation for future research. However,…

Software Engineering · Computer Science 2025-04-14 Lázaro Costa , Susana Barbosa , Jácome Cunha

Scientific open-source software (Sci-OSS) projects are critical for advancing research, yet sustaining these projects long-term remains a major challenge. This paper explores the sustainability of Sci-OSS hosted on GitHub, focusing on two…

Software Engineering · Computer Science 2025-11-12 Sharif Ahmed , Addi Malviya Thakur , Gregory R. Watson , Nasir U. Eisty

Being able to duplicate published research results is an important process of conducting research whether to build upon these findings or to compare with them. This process is called "replicability" when using the original authors'…

Digital Libraries · Computer Science 2020-05-07 Nicolas Bonneel , David Coeurjolly , Julie Digne , Nicolas Mellado

Large language models (LLMs) have been touted to enable increased productivity in many areas of today's work life. Scientific research as an area of work is no exception: the potential of LLM-based tools to assist in the daily work of…

Software Engineering · Computer Science 2024-04-24 Mohamed Nejjar , Luca Zacharias , Fabian Stiehle , Ingo Weber

High-quality research software is a cornerstone of modern scientific progress, enabling researchers to analyze complex data, simulate phenomena, and share reproducible results. However, creating such software requires adherence to best…

Software Engineering · Computer Science 2025-07-23 Nasir U. Eisty , David E. Bernholdt , Alex Koufos , David J. Luet , Miranda Mundt

Almost all research work in computational neuroscience involves software. As researchers try to understand ever more complex systems, there is a continual need for software with new capabilities. Because of the wide range of questions being…

Neurons and Cognition · Quantitative Biology 2013-11-21 Marc-Oliver Gewaltig , Robert Cannon

Researchers in the humanities are among the many who are now exploring the world of big data. They have begun to use programming languages like Python or R and their corresponding libraries to manipulate large data sets and discover brand…

Software Engineering · Computer Science 2020-07-30 Dewi Yokelson

Research scientists increasingly rely on implementing software to support their research. While previous research has examined the impact of identifier names on program comprehension in traditional programming environments, limited work has…

Software Engineering · Computer Science 2025-07-23 Gunnar Larsen , Carol Wong , Anthony Peruma

How should software engineering be adapted for Computational Science (CS)? If we understood that, then we could better support software sustainability, verifiability, reproducibility, comprehension, and usability for CS community. For…

Software Engineering · Computer Science 2020-03-13 Huy Tu , Rishabh Agrawal , Tim Menzies

With the recognized crisis of credibility in scientific research, there is a growth of reproducibility studies in computer science, and although existing surveys have reviewed reproducibility from various perspectives, especially very…

Software Engineering · Computer Science 2023-12-19 José Armando Hernández , Miguel Colom

We studied scientists who attended two-day workshops on basic software skills to determine which tools and practices they found most useful. Our pre- and post-workshop surveys showed increases in self-reported familiarity, while our…

Software Engineering · Computer Science 2014-09-11 Jory Schossau , Greg Wilson

Under the data-driven research paradigm, research software has come to play crucial roles in nearly every stage of scientific inquiry. Scholars are advocating for the formal citation of software in academic publications, treating it on par…

Digital Libraries · Computer Science 2023-07-19 Yuzhuo Wang , Kai Li