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This paper presents a versatile model for generating fractal complex networks that closely mirror the properties of real-world systems. By combining features of reverse renormalization and evolving network models, the proposed approach…

Physics and Society · Physics 2025-09-23 Kordian Makulski , Mateusz Samsel , Michal Lepek , Agata Fronczak , Piotr Fronczak

Networks representing many complex systems in nature and society share some common structural properties like heterogeneous degree distributions and strong clustering. Recent research on network geometry has shown that those real networks…

Physics and Society · Physics 2015-09-23 Rodrigo Aldecoa , Chiara Orsini , Dmitri Krioukov

We consider the problem of constructing an erasure code for storage over a network when the data sources are distributed. Specifically, we assume that there are n storage nodes with limited memory and k<n sources generating the data. We…

Information Theory · Computer Science 2016-11-15 Alexandros G. Dimakis , Vinod Prabhakaran , Kannan Ramchandran

In this paper, we use a partition of the links of a network in order to uncover its community structure. This approach allows for communities to overlap at nodes, so that nodes may be in more than one community. We do this by making a node…

Physics and Society · Physics 2009-07-24 T. S. Evans , R. Lambiotte

Crack-templated networks, metallic frameworks fabricated from crack patterns in sacrificial thin films, can exhibit high optical transmittance, high electric conductivity, and a host of other properties attractive for applications. Despite…

Applied Physics · Physics 2022-06-08 Jaeuk Kim , Thomas M. Truskett

Deterministic reaction networks (RNs) are tools to model diverse biological phenomena characterized by particle systems, when there are abundant number of particles. Examples include but are not limited to biochemistry, molecular biology,…

Molecular Networks · Quantitative Biology 2021-07-22 Carsten Wiuf , Chuang Xu

Most real-world graphs exhibit a hierarchical structure, which is often overlooked by existing graph generation methods. To address this limitation, we propose a novel graph generative network that captures the hierarchical nature of graphs…

Machine Learning · Computer Science 2026-01-01 Mahdi Karami

The sheer sizes of modern datasets are forcing data-structure designers to consider seriously both parallel construction and compactness. To achieve those goals we need to design a parallel algorithm with good scalability and with low…

Data Structures and Algorithms · Computer Science 2017-05-02 Leo Ferres , José Fuentes-Sepúlveda , Travis Gagie , Meng He , Gonzalo Navarro

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Algorithms to generate various combinatorial structures find tremendous importance in computer science. In this paper, we begin by reviewing an algorithm proposed by Rohl that generates all unique permutations of a list of elements which…

Data Structures and Algorithms · Computer Science 2010-10-01 Pramod Ganapathi , Rama B

This paper proposes a new dimensionality reduction algorithm named branching embedding (BE). It converts a dendrogram to a two-dimensional scatter plot, and visualizes the inherent structures of the original high-dimensional data. Since the…

Machine Learning · Statistics 2018-05-08 Makito Oku

Reduced-rank decompositions provide descriptions of the variation among the elements of a matrix or array. In such decompositions, the elements of an array are expressed as products of low-dimensional latent factors. This article presents a…

Methodology · Statistics 2010-06-01 Peter Hoff

In this work, we present a distributed framework based on the graph algorithm for computing control invariant set for nonlinear cascade systems. The proposed algorithm exploits the structure of the interconnections within a process network.…

Systems and Control · Electrical Eng. & Systems 2022-05-12 Benjamin Decardi-Nelson , Jinfeng Liu

While gradient descent has proven highly successful in learning connection weights for neural networks, the actual structure of these networks is usually determined by hand, or by other optimization algorithms. Here we describe a simple…

Neural and Evolutionary Computing · Computer Science 2016-08-09 Thomas Miconi

This paper studies the hierarchical clustering problem, where the goal is to produce a dendrogram that represents clusters at varying scales of a data set. We propose the ParChain framework for designing parallel hierarchical agglomerative…

Data Structures and Algorithms · Computer Science 2022-02-15 Shangdi Yu , Yiqiu Wang , Yan Gu , Laxman Dhulipala , Julian Shun

Network representation learning has exploded recently. However, existing studies usually reconstruct networks as sequences or matrices, which may cause information bias or sparsity problem during model training. Inspired by a cognitive…

Machine Learning · Computer Science 2019-10-01 Jie Bai , Linjing Li , Daniel Zeng

We construct tree-decompositions of graphs that distinguish all their k-blocks and tangles of order k, for any fixed integer k. We describe a family of algorithms to construct such decompositions, seeking to maximize their diversity subject…

Combinatorics · Mathematics 2014-04-25 Johannes Carmesin , Reinhard Diestel , Matthias Hamann , Fabian Hundertmark

We present a new kernel-based algorithm for modeling evenly distributed multidimensional datasets that does not rely on input space sparsification. The presented method reorganizes the typical single-layer kernel-based model into a deep…

Machine Learning · Computer Science 2020-05-01 Hossein Mohamadipanah , Mahdi Heydari , Girish Chowdhary

When modeling microstructures, the computational resource requirements increase rapidly as the simulation domain becomes larger. As a result, simulating a small representative fraction under periodic boundary conditions is often a necessary…

We propose a novel tree-like curvilinear structure reconstruction algorithm based on supervised learning and graph theory. In this work we analyze image patches to obtain the local major orientations and the rankings that correspond to the…

Computer Vision and Pattern Recognition · Computer Science 2016-12-09 Seong-Gyun Jeong , Yuliya Tarabalka , Nicolas Nisse , Josiane Zerubia
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