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Genetic regulatory networks (GRNs) have been widely studied, yet there is a lack of understanding with regards to the final size and properties of these networks, mainly due to no network currently being complete. In this study, we analyzed…

Molecular Networks · Quantitative Biology 2019-03-13 Adrian I. Campos-González , Julio A. Freyre-González

Designing strong and robust bio-inspired structures requires an understanding of how function arises from the architecture and geometry of materials found in nature. We draw from trabecular bone, a lightweight bone tissue that exhibits a…

Biological Physics · Physics 2019-10-09 Chantal Nguyen , Darin Peetz , Ahmed E. Elbanna , Jean M. Carlson

Internally generated active stresses drive soft materials into architectures inaccessible to thermal self-assembly. We use a microtubule-based active fluid to assemble and irreversibly restructure actin-fascin networks. Subsequently, we…

Soft Condensed Matter · Physics 2026-05-13 Kyu Hwan Choi , Sattvic Ray , Reef Sweeney , Zvonimir Dogic , Sho C. Takatori

Major cities worldwide experience problems with the performance of their road transportation networks, and the continuous increase in traffic demand presents a substantial challenge to the optimal operation of urban road networks and the…

Systems and Control · Electrical Eng. & Systems 2026-05-18 Linghang Sun , Yifan Zhang , Cristian Axenie , Margherita Grossi , Anastasios Kouvelas , Michail A. Makridis

Force-directed layout algorithms are ubiquitously-used tools for network visualisation across a multitude of scientific disciplines. However, they lack theoretical grounding which allows to interpret their outcomes rigorously and can guide…

Social and Information Networks · Computer Science 2025-05-14 Felix Gaisbauer , Armin Pournaki , Sven Banisch , Eckehard Olbrich

Functional networks provide a topological description of activity patterns in the brain, as they stem from the propagation of neural activity on the underlying anatomical or structural network of synaptic connections. This latter is well…

Disordered Systems and Neural Networks · Physics 2021-02-11 Ali Safari , Paolo Moretti , Ibai Diez , Jesus M. Cortes , Miguel Ángel Muñoz

Functional networks, i.e. networks representing dynamic relationships between the components of a complex system, have been instrumental for our understanding of, among others, the human brain. Due to limited data availability, the…

Physics and Society · Physics 2015-06-24 Massimiliano Zanin

Soft Random Geometric Graphs (SRGGs) have been widely applied to various models including those of wireless sensor, communication, social and neural networks. SRGGs are constructed by randomly placing nodes in some space and making pairwise…

Disordered Systems and Neural Networks · Physics 2018-12-05 Pete Pratt , Carl P. Dettmann , Woon Hau Chin

A number of network structural characteristics have recently been the subject of particularly intense research, including degree distributions, community structure, and various measures of vertex centrality, to mention only a few. Vertices…

Social and Information Networks · Computer Science 2016-03-23 Igor Trpevski , Tamara Dimitrova , Tommy Boshkovski , Ljupco Kocarev

This work explores hypernetworks: an approach of using a one network, also known as a hypernetwork, to generate the weights for another network. Hypernetworks provide an abstraction that is similar to what is found in nature: the…

Machine Learning · Computer Science 2016-12-02 David Ha , Andrew Dai , Quoc V. Le

Proximity networks are time-varying graphs representing the closeness among humans moving in a physical space. Their properties have been extensively studied in the past decade as they critically affect the behavior of spreading phenomena…

Physics and Society · Physics 2019-11-28 Fragkiskos Papadopoulos , Marco Antonio Rodríguez Flores

Disordered fibrous matrices, formed by the random assembly of fibers, provide the structural framework for many biological systems and biomaterials. Applied deformation modifies the alignment and stress states of constituent fibers, tuning…

Soft Condensed Matter · Physics 2025-02-10 Mainak Sarkar , Christina Laukaitis , Amy Wagoner Johnson

Deformation due to embedded fluidic networks is currently studied in the context of soft-actuators and soft-robotics. Expanding on this concept, beams can be designed so that the pressure in the channel-network is created directly from…

Soft Condensed Matter · Physics 2014-09-09 Yoav Matia , Amir Gat

Distributions of the resilience of transport networks are studied numerically, in particular the large-deviation tails. Thus, not only typical quantities like average or variance but the distributions over the (almost) full support can be…

Physics and Society · Physics 2015-06-18 Alexander K. Hartmann

Random network models play a prominent role in modeling, analyzing and understanding complex phenomena on real-life networks. However, a key property of networks is often neglected: many real-world networks exhibit spatial structure, the…

Quantitative Methods · Quantitative Biology 2017-02-07 John Lang , Hans De Sterck , Jamieson L. Kaiser , Joel C. Miller

We investigate the global failure threshold of an interconnected set of elements, when a finite fraction of the elements initially share an externally applied load. The study is done under the framework of random fiber bundle model, where…

Statistical Mechanics · Physics 2018-07-09 Soumyajyoti Biswas , Parongama Sen

We consider two variational models for transport networks, an urban planning and a branched transport model, in which the degree of network complexity and ramification is governed by a small parameter $\varepsilon>0$. Smaller $\varepsilon$…

Classical Analysis and ODEs · Mathematics 2017-11-16 Alessio Brancolini , Benedikt Wirth

Inspired by empirical studies of networked systems such as the Internet, social networks, and biological networks, researchers have in recent years developed a variety of techniques and models to help us understand or predict the behavior…

Statistical Mechanics · Physics 2015-06-24 M. E. J. Newman

The multiscale behavior of the individual fibrin fibers and fibrin clots is modeled by coupling atomistic simulation data and microscopic experimental data. We propose a protofibril element made up of nonlinear spring network, constructed…

Biological Physics · Physics 2018-08-14 Sumith Yesudasan , Rodney D Averett

We model the robustness against random failure or intentional attack of networks with arbitrary large-scale structure. We construct a block-based model which incorporates --- in a general fashion --- both connectivity and interdependence…

Physics and Society · Physics 2012-09-25 Tiago P. Peixoto , Stefan Bornholdt
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