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Background: The inception of next generations sequencing technologies have exponentially increased the volume of biological sequence data. Protein sequences, being quoted as the `language of life', has been analyzed for a multitude of…

Quantitative Methods · Quantitative Biology 2020-12-08 Nabil Ibtehaz , S. M. Shakhawat Hossain Sourav , Md. Shamsuzzoha Bayzid , M. Sohel Rahman

Dirty entity resolution (ER), which identifies records referring to the same real-world entity from a single, messy dataset, is a fundamental task in data management and mining. However, the dominant blocking-matching-clustering paradigm…

Computation and Language · Computer Science 2026-05-26 Hongtao Wang , Renchi Yang , Haoran Zheng , Xiangyu Ke

Stochastic nested optimization, including stochastic compositional, min-max and bilevel optimization, is gaining popularity in many machine learning applications. While the three problems share the nested structure, existing works often…

Machine Learning · Statistics 2021-06-28 Tianyi Chen , Yuejiao Sun , Wotao Yin

Text-to-SQL systems facilitate smooth interaction with databases by translating natural language queries into Structured Query Language (SQL), bridging the gap between non-technical users and complex database management systems. This survey…

Artificial Intelligence · Computer Science 2025-01-24 Aditi Singh , Akash Shetty , Abul Ehtesham , Saket Kumar , Tala Talaei Khoei

Property graphs often contain tree-shaped substructures, yet they are not captured by existing proposals for graph schemas; likewise, query languages and query engines offer little-to-no native support for managing them systematically. As a…

Graph-to-text generation has benefited from pre-trained language models (PLMs) in achieving better performance than structured graph encoders. However, they fail to fully utilize the structure information of the input graph. In this paper,…

Computation and Language · Computer Science 2025-06-11 Qingyun Wang , Semih Yavuz , Victoria Lin , Heng Ji , Nazneen Rajani

Graph-based multi-view clustering has become an active topic due to the efficiency in characterizing both the complex structure and relationship between multimedia data. However, existing methods have the following shortcomings: (1) They…

Computer Vision and Pattern Recognition · Computer Science 2021-08-17 Tianyu Jiang , Quanxue Gao , Xinbo Gao

Much sequential data exhibits highly non-uniform information distribution. This cannot be correctly modeled by traditional Long Short-Term Memory (LSTM). To address that, recent works have extended LSTM by adding more activations between…

Neural and Evolutionary Computing · Computer Science 2019-03-07 Yifeng Zhang , Ka-Ho Chow , S. -H. Gary Chan

We propose a technique for learning representations of parser states in transition-based dependency parsers. Our primary innovation is a new control structure for sequence-to-sequence neural networks---the stack LSTM. Like the conventional…

Computation and Language · Computer Science 2015-06-01 Chris Dyer , Miguel Ballesteros , Wang Ling , Austin Matthews , Noah A. Smith

Time-series anomaly detection (TSAD) is critical in domains such as industrial monitoring, healthcare, and cybersecurity, but it remains challenging due to rare and heterogeneous anomalies and the scarcity of labelled data. This scarcity…

Machine Learning · Computer Science 2026-05-05 Romain Hermary , Samet Hicsonmez , Dan Pineau , Abd El Rahman Shabayek , Djamila Aouada

The ubiquity and value of tables as semi-structured data across various domains necessitate advanced methods for understanding their complexity and vast amounts of information. Despite the impressive capabilities of large language models…

Computation and Language · Computer Science 2024-11-14 Deyi Ji , Lanyun Zhu , Siqi Gao , Peng Xu , Hongtao Lu , Jieping Ye , Feng Zhao

Automated speech recognition coverage of the world's languages continues to expand. However, standard phoneme based systems require handcrafted lexicons that are difficult and expensive to obtain. To address this problem, we propose a…

Audio and Speech Processing · Electrical Eng. & Systems 2020-08-17 Arindrima Datta , Guanlong Zhao , Bhuvana Ramabhadran , Eugene Weinstein

Large Language Models (LLMs) have demonstrated remarkable capabilities in modeling sequential textual data and generalizing across diverse tasks. However, adapting LLMs to effectively handle structural data, such as knowledge graphs or web…

Computation and Language · Computer Science 2025-11-12 Jiarui Feng , Donghong Cai , Yixin Chen , Muhan Zhang

We focus on Text-to-SQL semantic parsing from the perspective of retrieval-augmented generation. Motivated by challenges related to the size of commercial database schemata and the deployability of business intelligence solutions, we…

Computation and Language · Computer Science 2024-11-05 Zhili Shen , Pavlos Vougiouklis , Chenxin Diao , Kaustubh Vyas , Yuanyi Ji , Jeff Z. Pan

Automatic code summarization frees software developers from the heavy burden of manual commenting and benefits software development and maintenance. Abstract Syntax Tree (AST), which depicts the source code's syntactic structure, has been…

Software Engineering · Computer Science 2021-03-19 Chen Lin , Zhichao Ouyang , Junqing Zhuang , Jianqiang Chen , Hui Li , Rongxin Wu

We study the problem of constructing universal Steiner trees for undirected graphs. Given a graph $G$ and a root node $r$, we seek a single spanning tree $T$ of minimum {\em stretch}, where the stretch of $T$ is defined to be the maximum…

Data Structures and Algorithms · Computer Science 2015-03-03 Costas Busch , Chinmoy Dutta , Jaikumar Radhakrishnan , Rajmohan Rajaraman , Srivathsan Srinivasagopalan

While AI systems have made remarkable progress in processing unstructured text, structured data such as graphs stored in databases, continues to grow rapidly yet remains difficult for neural models to effectively utilize. We introduce…

Databases · Computer Science 2026-03-09 Yufei Li , Yisen Gao , Jiaxin Bai , Jiaxuan Xiong , Haoyu Huang , Zhongwei Xie , Hong Ting Tsang , Yangqiu Song

The increasing availability and usage of Knowledge Graphs (KGs) on the Web calls for scalable and general-purpose solutions to store this type of data structures. We propose Trident, a novel storage architecture for very large KGs on…

Databases · Computer Science 2020-01-27 Jacopo Urbani , Ceriel Jacobs

Attention-based encoder-decoder architectures such as Listen, Attend, and Spell (LAS), subsume the acoustic, pronunciation and language model components of a traditional automatic speech recognition (ASR) system into a single neural…

Tabular data synthesis involves not only multi-table synthesis but also generating multi-modal data (e.g., strings and categories), which enables diverse knowledge synthesis. However, separating numerical and categorical data has limited…

Machine Learning · Computer Science 2025-03-21 Tung Sum Thomas Kwok , Chi-Hua Wang , Guang Cheng
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