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Fix a finite set of points in Euclidean $n$-space $\euc^n$, thought of as a point-cloud sampling of a certain domain $D\subset\euc^n$. The Rips complex is a combinatorial simplicial complex based on proximity of neighbors that serves as an…
Aqueous solubility and partition coefficient are important physical properties of small molecules. Accurate theoretical prediction of aqueous solubility and partition coefficient plays an important role in drug design and discovery. The…
We extend the notion of the distance to a measure from Euclidean space to probability measures on general metric spaces as a way to do topological data analysis in a way that is robust to noise and outliers. We then give an efficient way to…
The degree-Rips bifiltration is the most computable of the parameter-free, density-sensitive bifiltrations in topological data analysis. It is known that this construction is stable to small perturbations of the input data, but its…
We introduce a novel class of explicit feature maps based on topological indices that represent each graph by a compact feature vector, enabling fast and interpretable graph classification. Using radial basis function kernels on these…
Persistent homology is a popular tool in Topological Data Analysis. It provides numerical characteristics of data sets which reflect global geometric properties. In order to be useful in practice, for example for feature generation in…
Segmentation networks are not explicitly imposed to learn global invariants of an image, such as the shape of an object and the geometry between multiple objects, when they are trained with a standard loss function. On the other hand,…
Persistent homology of the Rips filtration allows to track topological features of a point cloud over scales, and is a foundational tool of topological data analysis. Unfortunately, the Rips-filtration is exponentially sized, when…
Persistent homology has been widely used to study the topology of point clouds in $\mathbb{R}^n$. Standard approaches are very sensitive to outliers, and their computational complexity depends badly on the number of data points. In this…
In this paper, we relate the framework of mod-$\phi$ convergence to the construction of approximation schemes for lattice-distributed random variables. The point of view taken here is that of Fourier analysis in the Wiener algebra, allowing…
We develop a toric topological framework for studying the cohomology of Vietoris--Rips complexes $VR(Q_n;r)$ of hypercube graphs. Using total domination invariants and spectral methods, we establish general lower bounds on connectivity,…
In the simplicial theory of hypercoverings, we replace the indexing category $\Delta$ by the \emph{symmetric simplicial category} $\Delta S$ and study (a class of) $\Delta S$-hypercoverings, which we call \emph{spaces admitting symmetric…
We introduce the monoidal Rips filtration, a filtered simplicial set for weighted directed graphs and other lattice-valued networks. Our construction generalizes the Vietoris-Rips filtration for metric spaces by replacing the maximum…
Given an unknown $\mathbb{R}^n$-valued function $f$ on a metric space $X$, can we approximate the persistent homology of $f$ from a finite sampling of $X$ with known pairwise distances and function values? This question has been answered in…
In this paper, we present a novel workflow consisting of algebraic algorithms and data structures for fast and topologically accurate conversion of vector data models such as Boundary Representations into voxels (topological voxelization);…
To a coarse structure we associate a Grothendieck topology which is determined by coarse covers. A coarse map between coarse spaces gives rise to a morphism of Grothendieck topologies. This way we define sheaves and sheaf cohomology on…
Using lattice approximations of Euclidean space, we develop a way to approximate stable processes that are represented by stochastic integrals over Euclidean space. Via a stable version of the Lindeberg-Feller Theorem we show that the…
In this thesis, we construct a new version of orthogonal calculus for functors $F$ from $C_2$-representations to $C_2$-spaces, where $C_2$ is the cyclic group of order 2. For example, the functor $BO(-)$, which sends a $C_2$-representation…
Proximity complexes and filtrations are central constructions in topological data analysis. Built using distance functions, or more generally metrics, they are often used to infer connectivity information from point clouds. Here we…
Computing Persistent Homology for large point clouds remains a bottleneck for the wider adoption of persistent homology by the scientific community. We present an algorithm which can compute the degree-1 Vietoris-Rips Persistent Homology of…