English
Related papers

Related papers: Interpretable Enzyme Function Prediction via Resid…

200 papers

Real-world object detection must operate in evolving environments where new classes emerge, domains shift, and unseen objects must be identified as "unknown": all without accessing prior data. We introduce Evolving World Object Detection…

Computer Vision and Pattern Recognition · Computer Science 2026-04-03 Munish Monga , Vishal Chudasama , Pankaj Wasnik , C. V. Jawahar

The past decade has seen a revolution in genomic technologies that enable a flood of genome-wide profiling of chromatin marks. Recent literature tried to understand gene regulation by predicting gene expression from large-scale chromatin…

Machine Learning · Computer Science 2017-11-08 Ritambhara Singh , Jack Lanchantin , Arshdeep Sekhon , Yanjun Qi

Multimodal Large Language Models (MLLMs) have shown remarkable success in comprehension tasks such as visual description and visual question answering. However, their direct application to embedding-based tasks like retrieval remains…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Lihao Liu , Yan Wang , Biao Yang , Da Li , Jiangxia Cao , Yuxiao Luo , Xiang Chen , Xiangyu Wu , Wei Yuan , Fan Yang , Guiguang Ding , Tingting Gao , Guorui Zhou

In this paper, we propose a novel query design for the transformer-based object detection. In previous transformer-based detectors, the object queries are a set of learned embeddings. However, each learned embedding does not have an…

Computer Vision and Pattern Recognition · Computer Science 2022-01-05 Yingming Wang , Xiangyu Zhang , Tong Yang , Jian Sun

For machine learning models to be most useful in numerous sociotechnical systems, many have argued that they must be human-interpretable. However, despite increasing interest in interpretability, there remains no firm consensus on how to…

Machine Learning · Computer Science 2021-02-03 Andrew Slavin Ross , Nina Chen , Elisa Zhao Hang , Elena L. Glassman , Finale Doshi-Velez

Spectroscopic properties of molecules holds great importance for the description of the molecular response under the effect of an UV/Vis electromagnetic radiation. Computationally expensive ab initio (e.g. MultiConfigurational SCF, Coupled…

Structured prediction is the cornerstone of several machine learning applications. Unfortunately, in structured prediction settings with expressive inter-variable interactions, exact inference-based learning algorithms, e.g. Structural SVM,…

Machine Learning · Computer Science 2012-06-22 Rajhans Samdani , Dan Roth

Partial differential equations (PDEs) are ubiquitous in the world around us, modelling phenomena from heat and sound to quantum systems. Recent advances in deep learning have resulted in the development of powerful neural solvers; however,…

Artificial Intelligence · Computer Science 2023-11-13 Yolanne Yi Ran Lee

Grouping has been commonly used in deep metric learning for computing diverse features. However, current methods are prone to overfitting and lack interpretability. In this work, we propose an improved and interpretable grouping method to…

Computer Vision and Pattern Recognition · Computer Science 2021-08-26 Xinyi Xu , Zhengyang Wang , Cheng Deng , Hao Yuan , Shuiwang Ji

Accelerator-based neutrino physics is entering an energy-frontier regime in which interactions reach the TeV scale and produce exceptionally dense, overlapping detector signatures. In this regime, event interpretation becomes impractical…

High Energy Physics - Experiment · Physics 2026-04-09 Saúl Alonso-Monsalve , Fabio Cufino , Umut Kose , Anna Mascellani , André Rubbia

Referring Expression Comprehension (REC) aims to localize the target objects specified by free-form natural language descriptions in images. While state-of-the-art methods achieve impressive performance, they perform a dense perception of…

Computer Vision and Pattern Recognition · Computer Science 2024-06-27 Wei Su , Peihan Miao , Huanzhang Dou , Xi Li

Learning discriminative task-specific features simultaneously for multiple distinct tasks is a fundamental problem in multi-task learning. Recent state-of-the-art models consider directly decoding task-specific features from one shared…

Computer Vision and Pattern Recognition · Computer Science 2023-07-31 Hanrong Ye , Dan Xu

In recent years, deep learning has shown potential and efficiency in a wide area including computer vision, image and signal processing. Yet, translational challenges remain for user applications due to a lack of interpretability of…

Machine Learning · Computer Science 2022-07-12 Hamid Niknazar , Sara C. Mednick

Patient representation learning based on electronic health records (EHR) is a critical task for disease prediction. This task aims to effectively extract useful information on dynamic features. Although various existing works have achieved…

Machine Learning · Computer Science 2024-01-02 Ziyue Yu , Jiayi Wang , Wuman Luo , Rita Tse , Giovanni Pau

An effective potential function is critical for protein structure prediction and folding simulation. Simplified protein models such as those requiring only $C_\alpha$ or backbone atoms are attractive because they enable efficient search of…

Biomolecules · Quantitative Biology 2007-05-23 Jinfeng Zhang , Rong Chen , Jie Liang

This paper proposes a novel deep architecture to address multi-label image recognition, a fundamental and practical task towards general visual understanding. Current solutions for this task usually rely on an extra step of extracting…

Computer Vision and Pattern Recognition · Computer Science 2017-11-09 Zhouxia Wang , Tianshui Chen , Guanbin Li , Ruijia Xu , Liang Lin

In recent years, significant progress has been made in the field of protein function prediction with the development of various machine-learning approaches. However, most existing methods formulate the task as a multi-classification…

Quantitative Methods · Quantitative Biology 2024-04-23 Hadi Abdine , Michail Chatzianastasis , Costas Bouyioukos , Michalis Vazirgiannis

We introduce EVIL (\textbf{EV}olving \textbf{I}nterpretable algorithms with \textbf{L}LMs), an approach that uses LLM-guided evolutionary search to discover simple, interpretable algorithms for dynamical systems inference. Rather than…

Machine Learning · Computer Science 2026-04-20 David Berghaus

Representing code changes as numeric feature vectors, i.e., code change representations, is usually an essential step to automate many software engineering tasks related to code changes, e.g., commit message generation and just-in-time…

Software Engineering · Computer Science 2023-02-09 Zhongxin Liu , Zhijie Tang , Xin Xia , Xiaohu Yang

Detection Transformer (DETR) has redefined object detection by casting it as a set prediction task within an end-to-end framework. Despite its elegance, DETR and its variants still rely on fixed learnable queries and suffer from severe…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Zhengjian Kang , Jun Zhuang , Kangtong Mo , Qi Chen , Rui Liu , Ye Zhang