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Related papers: Self-diffusion in isotropic and liquid crystalline…

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We measure the self-diffusion of colloidal rod-like virus {\it fd} in an isotropic and nematic phase. A low volume fraction of viruses are labelled with a fluorescent dye and dissolved in a background of unlabelled rods. The trajectories of…

Soft Condensed Matter · Physics 2009-11-11 M. Paul Lettinga , Edward Barry , Zvonimir Dogic

We have developed a lab work module where we teach undergraduate students how to quantify the dynamics of a suspension of microscopic particles, measuring and analyzing the motion of those particles at the individual level or as a group.…

Soft Condensed Matter · Physics 2016-02-23 David Germain , Mathieu Leocmach , Thomas Gibaud

We study the self diffusion of individual particles in dense (non-)uniform complex fluids within dynamic density functional theory and explicitly account for their coupling to the temporally fluctuating background particles. Applying the…

Soft Condensed Matter · Physics 2011-09-14 Markus Bier , Rene van Roij , Marjolein Dijkstra , Paul van der Schoot

We studied the self-diffusion of colloidal ellipsoids in a monolayer near a flat wall by video microscopy. The image processing algorithm can track the positions and orientations of ellipsoids with sub-pixel resolution. The translational…

Soft Condensed Matter · Physics 2015-05-19 Zhongyu Zheng , Yilong Han

Particle size is a key variable in understanding the behaviour of the particulate products that underpin much of our modern lives. Typically obtained from suspensions at rest, measuring the particle size under flowing conditions would…

Soft Condensed Matter · Physics 2021-07-22 James A Richards , Vincent A Martinez , Jochen Arlt

Soft and biological materials are often composed of elementary constituents exhibiting an incessant roto-translational motion at the microscopic scale. Tracking this motion with a bright-field microscope becomes increasingly challenging…

Soft Condensed Matter · Physics 2021-04-30 Fabio Giavazzi , Antara Pal , Roberto Cerbino

The movement of molecules inside living cells is a fundamental feature of biological processes. The ability to both observe and analyse the details of molecular diffusion in vivo at the single molecule and single cell level can add…

Quantitative Methods · Quantitative Biology 2012-11-21 Alex Robson , Kevin Burrage , Mark Leake

We study self-diffusion and sedimentation in colloidal suspensions of nearly-hard spheres using the multiparticle collision dynamics simulation method for the solvent with a discrete mesh model for the colloidal particles (MD+MPCD). We…

Soft Condensed Matter · Physics 2022-01-26 Yashraj M. Wani , Penelope Grace Kovakas , Arash Nikoubashman , Michael P. Howard

We report on the dynamics in colloidal suspensions of stiff viral rods, called fd-Y21M. This mutant filamentous virus exhibits a persistence length 3.5 times larger than the wild-type fd-wt. Such a virus system can be used as a model system…

Soft Condensed Matter · Physics 2013-06-25 Emilie Pouget , Eric Grelet , M. Paul Lettinga

Diffusion coefficient measurements are important for many biological and material investigations, such as particle dynamics, kinetics, and size determinations. Amongst current measurement methods, single particle tracking (SPT) offers the…

Biomolecules · Quantitative Biology 2011-07-12 Shannon Kian Zareh , Michael C. DeSantis , Jonathan Kessler , Je-Luen Li , Y. M. Wang

The behavior of a colloidal suspension of rod-like {\it fd} viruses in the nematic phase, subjected to steady state and transient shear flows is studied. The monodisperse nature of these rods combined with relatively small textural…

Soft Condensed Matter · Physics 2007-05-23 M. Paul Lettinga , Zvonimir Dogic , Hao Wang , Jan Vermant

Diatoms are characterised by silica cell walls (frustules), which have highly ordered micro-/nano-structures. As the synthesis of such structures remains challenging, diatom frustules offer a promissing alternative to conventional porous…

Mesoscale and Nanoscale Physics · Physics 2024-10-24 Naoki Tomioka , Yusaku Abe , Yu Matsuda

The life of a cell is governed by highly dynamical microscopic processes. Two notable examples are the diffusion of membrane receptors and the kinetics of transcription factors governing the rates of gene expression. Different fluorescence…

Quantitative Methods · Quantitative Biology 2020-04-03 Maxime Woringer , Ignacio Izeddin , Cyril Favard , Hugues Berry

We investigate spinodal decomposition kinetics of an initially nematic dispersion of rod-like viruses (fd virus). Quench experiments are performed from a flow-stabilized homogeneous nematic state at high shear rate into the two-phase…

Soft Condensed Matter · Physics 2009-11-11 M. Paul Lettinga , Kyongok Kang , Peter Holmqvist , Arnout Imhof , Didi Derks , Jan K. G. Dhont

The viscosity and self-diffusion constant of a mesoscale hydrodynamic method, dissipative particle dynamics (DPD), are investigated. The viscosity of DPD with finite time step, including the Lowe-Anderson thermostat, is derived analytically…

Soft Condensed Matter · Physics 2009-11-13 Hiroshi Noguchi , Gerhard Gompper

Single-file diffusion (SFD) is a key mechanism underlying transport phenomena in confined physical and biological systems. In a typical SFD process, microscopic particles are restricted to moving in a narrow channel where they cannot pass…

Soft Condensed Matter · Physics 2025-05-28 A. Akintunde , P. Bayati , H. Row , S. A. Mallory

We report on a comprehensive theory-simulation-experimental study of collective and self-diffusion in suspensions of charge-stabilized colloidal spheres. In simulation and theory, the spheres interact by a hard-core plus screened Coulomb…

Soft Condensed Matter · Physics 2018-04-13 Adolfo J. Banchio , Marco Heinen , Peter Holmqvist , Gerhard Nägele

We study the 2D motion of colloidal dimers by single-particle tracking and compare the experimental observations obtained by bright-field microscopy to theoretical predictions for anisotropic diffusion. The comparison is based on the…

In this paper, we study a macroscopic system of electrically interacting metallic beads organized as a sequence along an annulus. A random mechanical shaking mimics the thermal excitation. We exhibit non Fickian diffusion (Single File…

Statistical Mechanics · Physics 2015-05-18 Christophe Coste , Jean-Baptiste Delfau , Catherine Even , Michel Saint Jean

Filamentous bacteriophages fd are viral particles, highly monodisperse in size, that have been widely used as a model colloidal system for studying the self-assembly of rod-shaped particles as well as a versatile template in nanoscience. In…

Soft Condensed Matter · Physics 2026-01-14 Lohitha R. Hegde , Kamendra P. Sharma , Eric Grelet
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