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Active particle systems of interacting self-propelled particles offer a versatile framework for modeling complex systems. When employed to describe aspects of animal behavior, the complexity of animal movement and decision-making often…

Biological Physics · Physics 2025-01-09 Amir Haluts , Dan Gorbonos , Nir S. Gov

The RMPCDMD software package performs hybrid Molecular Dynamics simulations, coupling Multiparticle Collision Dynamics to model the solvent and Molecular Dynamics to model suspended colloids, including hydrodynamics, thermal fluctuations,…

Computational Physics · Physics 2017-01-13 Pierre de Buyl , Mu-Jie Huang , Laurens Deprez

We present a generic framework for describing interacting, spinning, active polar particles, aimed at modelling dense cell aggregates, where cells are treated as polar, rotating objects that interact mechanically with one another and their…

Soft Condensed Matter · Physics 2024-11-01 Quentin Vagne , Guillaume Salbreux

Modelling micro- and meso-scopic scale thermodynamic and transport properties of soft condensed matter hinges upon its representation. This is especially relevant for polar solvents such as water, since these require effective…

Soft Condensed Matter · Physics 2026-04-17 Michael A. Seaton , Benjamin T. Speake , Ilian T. Todorov

We formulate and test a hybrid fluid-Monte Carlo scheme for the treatment of elastic collisions in gases and plasmas. While our primary focus and demonstrations of applicability are for moderately collisional plasmas, as described by the…

Computational Physics · Physics 2015-06-12 L. F. Ricketson , M. S. Rosin , R. E. Caflisch , Andris M. Dimits

Soft particles at fluid interfaces play an important role in many aspects of our daily life, such as the food industry, paints and coatings, and medical applications. Analytical methods are not capable of describing the emergent effects of…

Computational Physics · Physics 2019-09-25 Maarten Wouters , Othmane Aouane , Timm Krueger , Jens Harting

Flocking phase transitions found in models of polar active matter are paradigmatic examples of active phase transitions in soft matter. An interesting specialization of flocking models concerns a ``topological'' vs ``metric'' choice by…

Soft Condensed Matter · Physics 2024-09-10 Charles R. Packard , Daniel M. Sussman

Topological defects in active polar fluids can organise spontaneous flows and influence macroscopic density patterns. Both of them play, for example, an important role during animal development. Yet the influence of density on active flows…

We develop an efficient parallel multiscale method that bridges the atomistic and mesoscale regimes, from nanometer to micron and beyond, via concurrent coupling of atomistic simulation and mesoscopic dynamics. In particular, we combine an…

Computational Physics · Physics 2020-12-23 Yuying Wang , Zhen Li , Junbo Xu , Chao Yang , George Em Karniadakis

Compact objects evolving in an astrophysical environment experience a gravitational drag force known as dynamical friction. We present a multipole-frequency decomposition to evaluate the orbit-averaged energy and angular momentum…

Astrophysics of Galaxies · Physics 2025-09-22 Gali Eytan , Vincent Desjacques , Yonadav Barry Ginat

We introduce a kinetic Monte-Carlo model for self-propelled hard disks to capture with minimal ingredients the interplay between thermal fluctuations, excluded volume and self-propulsion in large assemblies of active particles. We analyze…

Soft Condensed Matter · Physics 2014-07-16 Demian Levis , Ludovic Berthier

We derive macroscopic dynamics for self-propelled particles in a fluid. The starting point is a coupled Vicsek-Stokes system. The Vicsek model describes self-propelled agents interacting through alignment. It provides a phenomenological…

Fluid Dynamics · Physics 2017-06-20 Pierre Degond , Sara Merino-Aceituno , Fabien Vergnet , Hui Yu

In partially ionised plasmas, the magnetic field can become decoupled from the neutral gas and diffuse through it in a process known as ambipolar diffusion. Although ambipolar diffusion has been implemented in several grid codes, we here…

Solar and Stellar Astrophysics · Physics 2015-06-22 James Wurster , Daniel J. Price , Ben A. Ayliffe

This paper extends the multiscale modeling framework introduced in Part I (Deng and Ha, Physica D: Nonlinear Phenomena 483 (2025) 134951) for sea-ice floe dynamics with non-rotating floes to the case with rotational floes and nonlinear…

Mathematical Physics · Physics 2026-02-26 Quanling Deng , Seung-Yeal Ha , Jaemoon Lee

We generalize our previous work on the phase stability and hydrodynamic of polar liquid crystals possessing local uniaxial $C_{\infty v}$-symmetry to biaxial systems exhibiting local $C_{2v}$-symmetry. Our work is motivated by the recently…

Soft Condensed Matter · Physics 2007-08-26 William Kung , M. Cristina Marchetti

We present a new method for Monte Carlo or Molecular Dynamics numerical simulations of three dimensional polar fluids. The simulation cell is defined to be the surface of the northern hemisphere of a four-dimensional (hyper)sphere. The…

Soft Condensed Matter · Physics 2014-09-29 Jean-Michel Caillol , Martin Trulsson

We analyze the nonlinear active microrheology of dense colloidal suspensions using a schematic model of mode-coupling theory. The model describes the strongly nonlinear behavior of the microscopic friction coefficient as a function of…

Soft Condensed Matter · Physics 2018-07-11 Manuel V. Gnann , Igor Gazuz , Antonio M. Puertas , Matthias Fuchs , Thomas Voigtmann

Coulomb collisions in particle simulations for weakly coupled plasmas are modeled by the Landau-Fokker-Planck equation, which is typically solved by Monte-Carlo (MC) methods. One of the main disadvantages of MC is the timestep accuracy…

Computational Physics · Physics 2025-01-03 G. Chen , A. J. Stanier , L. Chacón , S. E. Anderson , B. Philip

Novel "smectic-P" behavior, in which self-propelled particles form rows and move on average along them, occurs generically within the orientationally-ordered phase of simple models that we simulate. Both apolar (head-tail symmetric) and…

Soft Condensed Matter · Physics 2016-06-22 Pawel Romanczuk , Hugues Chaté , Leiming Chen , Sandrine Ngo , John Toner

We study and predict the interfacial tension, solubility parameters and Flory-Huggins parameters of binary mixtures as functions of pressure and temperature, using multiscale numerical simulation. A mesoscopic approach is proposed for…

Chemical Physics · Physics 2016-02-19 E. Mayoral , E. Nahmad-Achar