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We introduce a topology-based nonlinear network model of protein dynamics with the aim of investigating the interplay of spatial disorder and nonlinearity. We show that spontaneous localization of energy occurs generically and is a…

Biomolecules · Quantitative Biology 2011-11-10 Brice Juanico , Yves-Henri Sanejouand , Francesco Piazza , Paolo de los Rios

The stochastic variations in the structural properties of thin fiber networks govern to a great extent their mechanical performance. To assess the influence of local structural variability on the local strain and mechanical response of the…

Materials Science · Physics 2021-10-12 Mossab Alzweighi , Rami Mansour , Jussi Lahti , Ulrich Hirn , Artem Kulachenko

The impressive lifelong learning in animal brains is primarily enabled by plastic changes in synaptic connectivity. Importantly, these changes are not passive, but are actively controlled by neuromodulation, which is itself under the…

Neural and Evolutionary Computing · Computer Science 2021-07-06 Thomas Miconi , Aditya Rawal , Jeff Clune , Kenneth O. Stanley

When elastic solids are sheared, a nonlinear effect named after Poynting gives rise to normal stresses or changes in volume. We provide a novel relation between the Poynting effect and the microscopic Gr\"uneisen parameter, which quantifies…

Soft Condensed Matter · Physics 2018-04-16 Karsten Baumgarten , Brian P. Tighe

Dynamic models of signaling networks allow the formulation of hypotheses on the topology and kinetic rate laws characterizing a given molecular network, in-depth exploration and confrontation with kinetic biological data. Despite its…

Molecular Networks · Quantitative Biology 2018-08-01 Romain Yvinec , Mohammed Akli Ayoub , Francesco De Pascali , Pascale Crépieux , Eric Reiter , Anne Poupon

A field-theoretical description of the behavior of disordered, elastically isotropic, compressible systems characterized by two order parameters at the bicritical and tetracritical points is presented. The description is performed in the…

Statistical Mechanics · Physics 2007-05-23 S. V. Belim

This paper proposes a model of information cascades as directed spanning trees (DSTs) over observed documents. In addition, we propose a contrastive training procedure that exploits partial temporal ordering of node infections in lieu of…

Social and Information Networks · Computer Science 2018-12-13 Shaobin Xu , David A. Smith

Disordered elastic networks provide a framework for describing a wide variety of physical systems, ranging from amorphous solids, through polymeric fibrous materials to confluent cell tissues. In many cases, such networks feature two widely…

Soft Condensed Matter · Physics 2024-09-02 Edan Lerner , Eran Bouchbinder

Strain engineering offers unique control to manipulate the electronic band structure of two-dimensional materials (2DMs) resulting in an effective and continuous tuning of the physical properties. Ad-hoc straining 2D materials has…

In most networks, the connection between a pair of nodes is the result of their mutual affinity and attachment. In this letter, we will propose a Mutual Attraction Model to characterize weighted evolving networks. By introducing the initial…

Disordered Systems and Neural Networks · Physics 2009-11-11 Wen-Xu Wang , Bo Hu , Bing-Hong Wang , Gang Yan

We develop a continuum elastic approach to examining the bending mechanics of semiflexible filaments with a local internal degree of freedom that couples to the bending modulus. We apply this model to study the nonlinear mechanics of a…

Soft Condensed Matter · Physics 2013-02-12 Arthur A. Evans , Alex J. Levine

Residual networks have shown great success and become indispensable in recent deep neural network models. In this work, we aim to re-investigate the training process of residual networks from a novel social psychology perspective of…

Machine Learning · Computer Science 2023-05-05 Peng Ye , Tong He , Shengji Tang , Baopu Li , Tao Chen , Lei Bai , Wanli Ouyang

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example…

Statistical Mechanics · Physics 2009-09-30 Zoran Levnajić

In this paper, we propose an adaptive event-triggered reinforcement learning control for continuous-time nonlinear systems, subject to bounded uncertainties, characterized by complex interactions. Specifically, the proposed method is…

Machine Learning · Computer Science 2024-10-01 Umer Siddique , Abhinav Sinha , Yongcan Cao

The task of learning patterns is typically associated with systems that update parameters on fixed architectures, such as neural networks, where learning proceeds through continuous optimization. Here, we demonstrate that pattern learning…

Disordered Systems and Neural Networks · Physics 2026-04-29 Shabeeb Ameen , Tao Zhang , J. M. Schwarz

Underpinning the past decades of work on the design, initialization, and optimization of neural networks is a seemingly innocuous assumption: that the network is trained on a \textit{stationary} data distribution. In settings where this…

Machine Learning · Computer Science 2024-03-01 Clare Lyle , Zeyu Zheng , Khimya Khetarpal , Hado van Hasselt , Razvan Pascanu , James Martens , Will Dabney

The response of complex networks to perturbations is of utmost importance in areas as diverse as ecosystem management, emergency response, and cell reprogramming. A fundamental property of networks is that the perturbation of one node can…

Molecular Networks · Quantitative Biology 2011-05-20 Sean P. Cornelius , William L. Kath , Adilson E. Motter

Knitted sensors frequently suffer from inconsistencies due to innate effects such as offset, relaxation, and drift. These properties, in combination, make it challenging to reliably map from sensor data to physical actuation. In this paper,…

Systems and Control · Electrical Eng. & Systems 2023-10-20 Roland Aigner , Andreas Stöckl

Anisotropy in the mechanical response of materials with microstructure is common and yet is difficult to assess and model. To construct accurate response models given only stress-strain data, we employ classical representation theory, novel…

Materials Science · Physics 2022-09-07 Jan N. Fuhg , Nikolaos Bouklas , Reese E. Jones

Colloidal gel networks are disordered elastic solids that can form even in extremely dilute particle suspensions. With interaction strengths comparable to the thermal energy, their stress-bearing network can locally restructure via breaking…

Soft Condensed Matter · Physics 2014-06-18 Jader Colombo , Asaph Widmer-Cooper , Emanuela Del Gado
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