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We propose a new anytime hierarchical clustering method that iteratively transforms an arbitrary initial hierarchy on the configuration of measurements along a sequence of trees we prove for a fixed data set must terminate in a chain of…

Machine Learning · Statistics 2014-04-15 Omur Arslan , Daniel E. Koditschek

Heterogeneous materials are often organized in a hierarchical manner, where a basic unit is repeated over multiple scales.The structure then acquires a self-similar pattern. Examples of such structure are found in various biological and…

Statistical Mechanics · Physics 2019-08-28 Soumyajyoti Biswas , Michael Zaiser

Simulation in media with multiple continua where each continuum interacts with every other is often challenging due to multiple scales and high contrast. One needs some types of model reduction. One of the approaches is multi-continuum…

Numerical Analysis · Mathematics 2019-06-12 Jun Sur Richard Park , Viet Ha Hoang

Dry granular materials consist of a vast ensemble of discrete solid particles, interacting through complex frictional forces at the contact points. The particles are so large that these systems are believed to be completely athermal. Here,…

Soft Condensed Matter · Physics 2024-01-17 Kasra Farain , Daniel Bonn

We systematically study the design of simple patchy sphere models that reversibly self-assemble into monodisperse icosahedral clusters. We find that the optimal patch width is a compromise between structural specificity (the patches must be…

Soft Condensed Matter · Physics 2007-09-03 Alex W. Wilber , Jonathan P. K. Doye , Ard A. Louis , Eva G. Noya , Mark A. Miller , Pauline Wong

Algorithmic self-assembly, a generalization of crystal growth processes, has been proposed as a mechanism for autonomous DNA computation and for bottom-up fabrication of complex nanostructures. A `program' for growing a desired structure…

Materials Science · Physics 2010-01-08 Rebecca Schulman , Erik Winfree

This study presents a system integration approach for planning schedules, sequences, tasks, and motions for reconfigurable robots to automatically disassemble constrained structures in a non-destructive manner. Such systems must adapt their…

Robotics · Computer Science 2025-09-19 Takuya Kiyokawa , Tomoki Ishikura , Shingo Hamada , Genichiro Matsuda , Kensuke Harada

Self-organization creates new order and shifts sub-boundaries while reorganizing energy and entropy within a control volume. This article examines pathway selection and tests whether maximizing the entropy generation rate can forecast…

Materials Science · Physics 2026-03-10 J. A. Sekhar

Network data often arises via a series of structured interactions among a population of constituent elements. E-mail exchanges, for example, have a single sender followed by potentially multiple receivers. Scientific articles, on the other…

Methodology · Statistics 2019-01-30 Walter Dempsey , Brandon Oselio , Alfred Hero

In the present monograph we formulate a simple model for heat transfer in living tissue with self - regulation. The initial point of the model is the governing equations describing heat transfer in living tissue at the mesoscopic level,…

adap-org · Physics 2007-05-23 I. A. Lubashevsky , V. V. Gafiychuk

In geometrically frustrated assemblies, equilibrium self-limitation manifests in the form of a minimum in the free energy per subunit at a finite, multi-subunit size which results from the competition between the elastic costs of…

Soft Condensed Matter · Physics 2023-08-15 Michael Wang , Gregory Grason

We present a method that systematically simplifies isotropic interactions designed for targeted self-assembly. The uncertainty principle is used to show that an optimal simplification is achieved by a combination of heat kernel smoothing…

Soft Condensed Matter · Physics 2013-12-19 Erik Edlund , Oskar Lindgren , Martin Nilsson Jacobi

Predictively steering self-organising systems with hierarchical structure toward intended outcomes across widely separated dynamical scales remains a fundamental challenge. Despite decades of progress, hierarchy remains a descriptive…

Optics · Physics 2026-02-17 Aladin Şura , F. Ömer Ilday

We face a need of discovering a pattern in locations of a great number of points in a high-dimensional space. Goal is to group the close points together. We are interested in a hierarchical structure, like a B-tree. B-Trees are…

Data Structures and Algorithms · Computer Science 2016-07-19 Victor Sadikov , Oliver Rutishauser

The goal of inverse self-assembly is to design inter-particle interactions capable of assembling the units into a desired target structure. The effective assembly of complex structures often requires the use of multiple components, each new…

Soft Condensed Matter · Physics 2023-11-08 Camilla Beneduce , Francesco Sciortino , Petr Sulc , John Russo

The rapid progress in precisely designing the surface decoration of patchy colloidal particles offers a new, yet unexperienced freedom to create building entities for larger, more complex structures in soft matter systems. However, it is…

Soft Condensed Matter · Physics 2012-06-14 G. Doppelbauer , E. G. Noya , E. Bianchi , G. Kahl

Complex nonequilibrium self-assembly enables the formation of materials with specific patterns and functions from the bottom up. How to directionally control the assembly to form the target configuration is a challenge. Here, we propose a…

Soft Condensed Matter · Physics 2026-01-29 Chaoqun Du , Zhiyu Cao , Zhonghuai Hou

In a hierarchical nanopatterning routine relying exclusively on self-assembly processes we combine crystal surface reconstruction, microphase separation of copolymers, and selective metal diffusion to produce monodisperse metal…

Mesoscale and Nanoscale Physics · Physics 2017-07-07 Denise Erb , Kai Schlage , Ralf Röhlsberger

We examine the problem of making reconciled forecasts of large collections of related time series through a behavioural/Bayesian lens. Our approach explicitly acknowledges and exploits the 'connectedness' of the series in terms of…

Methodology · Statistics 2022-10-03 Ross Hollyman , Fotios Petropoulos , Michael E. Tipping

Understanding the complex self-assembly of biomacromolecules is a major outstanding question. Microtubules are one example of a biopolymer that possesses characteristics quite distinct from standard synthetic polymers that are derived from…

Soft Condensed Matter · Physics 2013-01-10 Shengfeng Cheng , Ankush Aggarwal , Mark J. Stevens
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