Related papers: Origin of $\alpha$-satellite repeat arrays from mi…
Satellite DNA are long tandemly repeating sequences in a genome and may be organized as high-order repeats (HORs). They are enriched in centromeres and are challenging to assemble. Existing algorithms for identifying satellite repeats…
Summary: Human alpha satellite and satellite 2/3 contribute to several percent of the human genome. However, identifying these sequences with traditional algorithms is computationally intensive. Here we develop dna-brnn, a recurrent neural…
The human genome remains incomplete, with multi-megabase sized gaps representing the endogenous centromeres and other heterochromatic regions. These regions are commonly enriched with long arrays of near-identical tandem repeats, known as…
We explore the large-scale behavior of nucleotide compositional strand asymmetries along human chromosomes. As we observe for 7 of 9 origins of replication experimentally identified so far, the (TA+GC) skew displays rather sharp upward…
Millisecond pulsars (MSPs) are the oldest but fastest pulsars known to date. In the 1980s, to explain how these pulsars could be formed, a new hypothesis was formulated: the recycling of pulsars, i.e the fact that a pulsar could accrete…
The PHASE software package allows phylogenetic tree construction with a number of evolutionary models designed specifically for use with RNA sequences that have conserved secondary structure. Evolution in the paired regions of RNAs occurs…
With over two dozen detections in the Milky Way, double neutron stars (DNSs) provide a unique window into massive binary evolution. We use the POSYDON binary population synthesis code to model DNS populations and compare them to the…
The origin of astrophysical high-energy neutrinos detected by the IceCube Neutrino Observatory remains a mystery to be solved. In this paper we search for neutrino source candidates within the $90$% containment area of $70$ track-type…
Although an exchange of genetic information by recombination plays an important role in the evolution of viruses, it is not clear how it generates diversity. {\it Geminiviruses} are plant viruses which have ambisense single-stranded…
The human genome contains repetitive DNA at different level of sequence length, number and dispersion. Highly repetitive DNA is particularly rich in homo-- and di--nucleotide repeats, while middle repetitive DNA is rich of families of…
We present a fundamental plane (FP) analysis of 141 early-type galaxies in the Shapley supercluster at z=0.049 based on spectroscopy from the AAOmega spectrograph at the AAT and photometry from the WFI on the ESO/MPI 2.2m telescope. The key…
Supernova explosions attributed to the unseen companion in several binary systems identified by the Third Gaia Data Release (Gaia DR3) may be responsible for a number of well-known and well-studied features in the radio sky, including the…
We have investigated the evolutionary connections of the isolated neutron star (NS) populations including radio pulsars (RPs), anomalous X-ray pulsars (AXPs), soft gamma repeaters (SGRs), dim isolated NSs (XDINs), ``high-magnetic-field''…
The RNA world hypothesis, that RNA genomes and catalysts preceded DNA genomes and genetically-encoded protein catalysts, has been central to models for the early evolution of life on Earth. A key part of such models is continuity between…
We derive the star formation histories of eight dwarf spheroidal (dSph) Milky Way satellite galaxies from their alpha element abundance patterns. Nearly 3000 stars from our previously published catalog (Paper II) comprise our data set. The…
Globular clusters (GCs) are the ideal environment for the formation of neutron stars (NSs) and millisecond pulsars (MSPs). NSs origin and evolution provide a useful information on stellar dynamics and evolution in star clusters, and are…
Supernova remnants (SNRs) carry vast amounts of mechanical and radiative energy that heavily influence the structural, dynamical, and chemical evolution of galaxies. To this day, more than 300 SNRs have been discovered in the Milky Way,…
Neutron star$-$white dwarf (NSWD) binaries are one of the most abundant sources of gravitational waves (GW) in the Milky Way. These GW sources are the evolutionary products of primordial binaries that experienced many processes of binary…
The discovery of wide, eccentric Gaia neutron stars (NSs) in binaries with still evolving (likely main sequence) companions offers a new probe of mass transfer and pulsar recycling beyond the compact-binary regime. We model their origins…
Mitochondrial function relies on the coordinated expression of mitochondrial and nuclear genes, exhibiting remarkable resilience regardless the susceptibility of mitochondrial DNA (mtDNA) to accumulate harmful mutations. A suggested…