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Adverse drug events (ADEs) are an important aspect of drug safety. Various texts such as biomedical literature, drug reviews, and user posts on social media and medical forums contain a wealth of information about ADEs. Recent studies have…

Computation and Language · Computer Science 2024-05-21 Shaoxiong Ji , Ya Gao , Pekka Marttinen

Embedding based Knowledge Graph (KG) Completion has gained much attention over the past few years. Most of the current algorithms consider a KG as a multidirectional labeled graph and lack the ability to capture the semantics underlying the…

Artificial Intelligence · Computer Science 2024-07-12 Mehwish Alam , Frank van Harmelen , Maribel Acosta

Retrieval-augmented generation (RAG) enables large language models (LLMs) to dynamically access external information, which is powerful for answering questions over previously unseen documents. Nonetheless, they struggle with high-level…

Artificial Intelligence · Computer Science 2026-04-21 Chi-Hsiang Hsiao , Yi-Cheng Wang , Tzung-Sheng Lin , Yi-Ren Yeh , Chu-Song Chen

In structure-based drug design, accurately estimating the binding affinity between a candidate ligand and its protein receptor is a central challenge. Recent advances in artificial intelligence, particularly deep learning, have demonstrated…

Biomolecules · Quantitative Biology 2025-09-18 Md Masud Rana , Farjana Tasnim Mukta , Duc D. Nguyen

Drug repurposing plays a critical role in accelerating treatment discovery, especially for complex and rare diseases. Biomedical knowledge graphs (KGs), which encode rich clinical associations, have been widely adopted to support this task.…

Computation and Language · Computer Science 2025-10-15 Chengrui Xiang , Tengfei Ma , Xiangzheng Fu , Yiping Liu , Bosheng Song , Xiangxiang Zeng

Retrieval augmented generation (RAG) has shown great power in improving Large Language Models (LLMs). However, most existing RAG-based LLMs are dedicated to retrieving single modality information, mainly text; while for many real-world…

Computation and Language · Computer Science 2025-06-09 Saptarshi Sengupta , Shuhua Yang , Paul Kwong Yu , Fali Wang , Suhang Wang

Conventional Knowledge Graph Completion (KGC) assumes that all test entities appear during training. However, in real-world scenarios, Knowledge Graphs (KG) evolve fast with out-of-knowledge-graph (OOKG) entities added frequently, and we…

Computation and Language · Computer Science 2020-09-29 Damai Dai , Hua Zheng , Fuli Luo , Pengcheng Yang , Baobao Chang , Zhifang Sui

Knowledge graphs (KGs) are a popular way to organise information based on ontologies or schemas and have been used across a variety of scenarios from search to recommendation. Despite advances in KGs, representing knowledge remains a…

Artificial Intelligence · Computer Science 2023-10-10 Christos Theodoropoulos , Natasha Mulligan , Thaddeus Stappenbeck , Joao Bettencourt-Silva

Large language models (LLMs) are increasingly used in the mental health domain, yet it remains unclear how well they capture related biomedical knowledge and how reliably they apply it to clinically salient structured judgments. Here, we…

Computation and Language · Computer Science 2026-05-18 Weixin Liu , Congning Ni , Shelagh A. Mulvaney , Susannah L. Rose , Murat Kantarcioglu , Bradley A. Malin , Zhijun Yin

In this paper, we present a novel diagnostic framework that integrates Knowledge Graphs (KGs) and Large Language Models (LLMs) to support system diagnostics in high-reliability systems such as nuclear power plants. Traditional diagnostic…

Artificial Intelligence · Computer Science 2025-09-01 Saman Marandi , Yu-Shu Hu , Mohammad Modarres

Medical image interpretation using deep learning has shown promise but often requires extensive expert-annotated datasets. To reduce this annotation burden, we develop an Image-Graph Contrastive Learning framework that pairs chest X-rays…

Image and Video Processing · Electrical Eng. & Systems 2024-05-17 Sameer Khanna , Daniel Michael , Marinka Zitnik , Pranav Rajpurkar

NeuralKG is an open-source Python-based library for diverse representation learning of knowledge graphs. It implements three different series of Knowledge Graph Embedding (KGE) methods, including conventional KGEs, GNN-based KGEs, and…

Multimodal Attributed Graphs (MAGs) are ubiquitous in real-world applications, encompassing extensive knowledge through multimodal attributes attached to nodes (e.g., texts and images) and topological structure representing node…

Machine Learning · Computer Science 2025-02-28 Hao Yan , Chaozhuo Li , Jun Yin , Zhigang Yu , Weihao Han , Mingzheng Li , Zhengxin Zeng , Hao Sun , Senzhang Wang

Knowledge graph embedding, which projects symbolic entities and relations into continuous vector spaces, is gaining increasing attention. Previous methods allow a single static embedding for each entity or relation, ignoring their intrinsic…

Artificial Intelligence · Computer Science 2020-04-07 Quan Wang , Pingping Huang , Haifeng Wang , Songtai Dai , Wenbin Jiang , Jing Liu , Yajuan Lyu , Yong Zhu , Hua Wu

Most Knowledge Graphs (KGs) contain textual descriptions of entities in various natural languages. These descriptions of entities provide valuable information that may not be explicitly represented in the structured part of the KG. Based on…

Computation and Language · Computer Science 2020-04-23 Genet Asefa Gesese , Mehwish Alam , Harald Sack

The multi-modal entity alignment (MMEA) aims to find all equivalent entity pairs between multi-modal knowledge graphs (MMKGs). Rich attributes and neighboring entities are valuable for the alignment task, but existing works ignore…

Computation and Language · Computer Science 2023-04-05 Qian Li , Shu Guo , Yangyifei Luo , Cheng Ji , Lihong Wang , Jiawei Sheng , Jianxin Li

In recent years, Knowledge Graph (KG) development has attracted significant researches considering the applications in web search, relation prediction, natural language processing, information retrieval, question answering to name a few.…

Information Retrieval · Computer Science 2022-05-19 Satvik Garg , Dwaipayan Roy

Knowledge graphs (KGs) contain rich information about world knowledge, entities and relations. Thus, they can be great supplements to existing pre-trained language models. However, it remains a challenge to efficiently integrate information…

Computation and Language · Computer Science 2020-10-05 Donghan Yu , Chenguang Zhu , Yiming Yang , Michael Zeng

Personal service robots are deployed to support daily living in domestic environments, particularly for elderly and individuals requiring assistance. These robots must perceive complex and dynamic surroundings, understand tasks, and execute…

Artificial Intelligence · Computer Science 2025-07-15 Margherita Martorana , Francesca Urgese , Mark Adamik , Ilaria Tiddi

Knowledge Graph (KG) completion research usually focuses on densely connected benchmark datasets that are not representative of real KGs. We curate two KG datasets that include biomedical and encyclopedic knowledge and use an existing…

Machine Learning · Computer Science 2021-06-15 Justin Lovelace , Denis Newman-Griffis , Shikhar Vashishth , Jill Fain Lehman , Carolyn Penstein Rosé
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