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Bacteriophages (phages) are key regulators of bacterial populations and hold great promise for applications such as phage therapy, biocontrol, and industrial fermentation. The success of these applications depends on accurately determining…

Genomics · Quantitative Biology 2026-01-23 Yang Shen , Keming Shi , Chen Yu , Rui Zhang , Yanni Sun , Jiayu Shang

Recent years have witnessed the remarkable success of deep learning in remote sensing image interpretation, driven by the availability of large-scale benchmark datasets. However, this reliance on massive training data also brings two major…

Computer Vision and Pattern Recognition · Computer Science 2026-01-23 Yonghao Xu , Pedram Ghamisi , Qihao Weng

We present a novel approach to knowledge transfer in model-based reinforcement learning, addressing the critical challenge of deploying large world models in resource-constrained environments. Our method efficiently distills a high-capacity…

Machine Learning · Computer Science 2025-07-03 Dmytro Kuzmenko , Nadiya Shvai

Viral hepatitis is the regularly found health problem throughout the world among other easily transmitted diseases, such as tuberculosis, human immune virus, malaria and so on. Among all hepatitis viruses, the uppermost numbers of deaths…

Computers and Society · Computer Science 2019-11-12 Henok Yared Agizew

Expanding existing learning systems to provide high-quality customized models for more domains, such as new users, is challenged by the limited labeled data and the data and device heterogeneities. While knowledge distillation methods could…

Artificial Intelligence · Computer Science 2025-02-10 Gaole Dai , Huatao Xu , Yifan Yang , Rui Tan , Mo Li

Distillation addresses the slow sampling problem in diffusion models by creating models with smaller size or fewer steps that approximate the behavior of high-step teachers. In this work, we propose a reinforcement learning based…

Machine Learning · Computer Science 2025-12-30 Amirhossein Tighkhorshid , Zahra Dehghanian , Gholamali Aminian , Chengchun Shi , Hamid R. Rabiee

Personalized vaccines and T-cell immunotherapies depend critically on identifying peptide-MHC class I (pMHC-I) interactions capable of eliciting potent immune responses. However, current benchmarks and models inherit biases present in…

Quantitative Methods · Quantitative Biology 2025-08-22 Sergio Mares , Ariel Espinoza Weinberger , Nilah M. Ioannidis

In this work we develop a stochastic model of acute HIV infection, based on the well-known standard model, that allows us to simulate the complex mutation pathways of HIV escape from multiple CTL responses. Under this model, we describe two…

Populations and Evolution · Quantitative Biology 2012-08-16 Sivan Leviyang

Mechanisms of immunity, and of the host-pathogen interactions in general are among the most fundamental problems of medicine, ecology, and evolution studies. Here, we present a microscopic, protein-level, sequence-based model of immune…

Biomolecules · Quantitative Biology 2007-11-22 Muyoung Heo , Konstantin B. Zeldovich , Eugene I. Shakhnovich

Antibodies are essential proteins responsible for immune responses in organisms, capable of specifically recognizing antigen molecules of pathogens. Recent advances in generative models have significantly enhanced rational antibody design.…

Artificial Intelligence · Computer Science 2025-11-10 Zichen Wang , Yaokun Ji , Jianing Tian , Shuangjia Zheng

Knowledge distillation extracts general knowledge from a pre-trained teacher network and provides guidance to a target student network. Most studies manually tie intermediate features of the teacher and student, and transfer knowledge…

Machine Learning · Computer Science 2021-02-08 Mingi Ji , Byeongho Heo , Sungrae Park

Background: Colorectal cancer (CRC) remains a leading cause of cancer-related mortality worldwide. Accurate survival prediction is essential for treatment stratification, yet existing pathology foundation models often overlook…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Hikmat Khan , Usama Sajjad , Metin N. Gurcan , Anil Parwani , Wendy L. Frankel , Wei Chen , Muhammad Khalid Khan Niazi

Purpose: Non-invasive grading of prostate cancer (PCa) from micro-ultrasound (micro-US) could expedite triage and guide biopsies toward the most aggressive regions, yet current models struggle to infer tissue micro-structure at coarse…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Emma Willis , Tarek Elghareb , Paul F. R. Wilson , Minh Nguyen Nhat To , Mohammad Mahdi Abootorabi , Amoon Jamzad , Brian Wodlinger , Parvin Mousavi , Purang Abolmaesumi

Advancements in artificial intelligence have driven the development of numerous pathology foundation models capable of extracting clinically relevant information. However, there is currently limited literature independently evaluating these…

Infection by distinct Dengue virus serotypes and host immunity are intricately linked. In particular, certain levels of cross-reactive antibodies in the host may actually enhance infection severity leading to Dengue hemorrhagic fever (DHF).…

Populations and Evolution · Quantitative Biology 2019-12-19 Hayriye Gulbudak , Cameron J. Browne

Data scarcity and unreliable self-reporting -- such as concealment or exaggeration -- pose fundamental challenges to psychiatric intake and assessment. We propose a multi-agent synthesis framework that explicitly models patient deception to…

Databases · Computer Science 2026-01-15 Xinyuan Zhang , Zijian Wang , Chang Dao , Juexiao Zhou

As more and more infection-specific machine learning models are developed and planned for clinical deployment, simultaneously running predictions from different models may provide overlapping or even conflicting information. It is important…

Machine Learning · Computer Science 2023-11-17 Ethan Harvey , Junzi Dong , Erina Ghosh , Ali Samadani

The early detection of infectious disease outbreaks is a crucial task to protect population health. To this end, public health surveillance systems have been established to systematically collect and analyse infectious disease data. A…

Applications · Statistics 2019-02-27 Benedikt Zacher , Irina Czogiel

Accurate estimation of disease prevalence is essential for guiding public health strategies. Imperfect diagnostic tests can cause misclassification errors-false positives (FP) and false negatives (FN)-that may skew estimates if unaddressed.…

Model distillation enables efficient emulation of frontier large language models (LLMs), creating a need for robust mechanisms to detect when a third-party student model has trained on a teacher model's outputs. However, existing…

Machine Learning · Computer Science 2026-05-18 Yixuan Even Xu , John Kirchenbauer , Yash Savani , Asher Trockman , Alexander Robey , Tom Goldstein , Fei Fang , J. Zico Kolter