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Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…

Populations and Evolution · Quantitative Biology 2019-11-28 Mareike Fischer , Michelle Galla , Lina Herbst , Yangjing Long , Kristina Wicke

A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…

Artificial Intelligence · Computer Science 2014-01-16 Neil C. A. Moore , Patrick Prosser

The classical approach to measure the expressive power of deep neural networks with piecewise linear activations is based on counting their maximum number of linear regions. This complexity measure is quite relevant to understand general…

Machine Learning · Computer Science 2021-02-26 Yuuki Takai , Akiyoshi Sannai , Matthieu Cordonnier

We give a complete characterization of the possible response matrices at a fixed frequency of n-terminal electrical networks of inductors, capacitors, resistors and grounds, and of n-terminal discrete linear elastodynamic networks of…

Materials Science · Physics 2009-11-13 Graeme W. Milton , Pierre Seppecher

Many physical systems--from mechanical lattices and electrical circuits to biological tissues and architected metamaterials--can be understood as networks transmitting physical quantities. We present a unified mathematical framework for…

Soft Condensed Matter · Physics 2025-08-07 José M. Ortiz-Tavárez , William Stephenson , Xiaoming Mao

We present the pattern underlying some of the properties of natural numbers, using the framework of complex networks. The network used is a divisibility network in which each node has a fixed identity as one of the natural numbers and the…

General Mathematics · Mathematics 2020-07-03 Abiya Rajans , G. Ambika

We address the problem of configuring a power distribution network with reliability and resilience objectives by satisfying the demands of the consumers and saturating each production source as little as possible. We consider power…

Computational Complexity · Computer Science 2023-11-21 Dominique Barth , Thierry Mautor , Dimitri Watel , Marc-Antoine Weisser

We study nonparametric methods for the setting where multiple distinct networks are observed on the same set of nodes. Such samples may arise in the form of replicated networks drawn from a common distribution, or in the form of…

Methodology · Statistics 2020-01-15 Swati Chandna , Pierre-Andre Maugis

The power grid is going through significant changes with the introduction of renewable energy sources and incorporation of smart grid technologies. These rapid advancements necessitate new models and analyses to keep up with the various…

Hierarchical tree structures are common in many real-world systems, from tree roots and branches to neuronal dendrites and biologically inspired artificial neural networks, as well as in technological networks for organizing and searching…

Statistical Mechanics · Physics 2025-02-04 Davide Cipollini , Lambert Schomaker

In this work we discuss the symmetric construction of bosonic and fermionic networks and we present a case of a network showing a mixed quantum statistics. This model takes into account the different nature of nodes, described by a random…

Statistical Mechanics · Physics 2009-11-07 Ginestra Bianconi

The neighbor-joining algorithm is a popular phylogenetics method for constructing trees from dissimilarity maps. The neighbor-net algorithm is an extension of the neighbor-joining algorithm and is used for constructing split networks. We…

Combinatorics · Mathematics 2008-05-13 Dan Levy , Lior Pachter

A fundamental method of reconstructing networks, e.g. in the context of gene regulation, relies on the precision matrix (the inverse of the variance-covariance matrix) as an indicator which variables are associated with each other. The…

Methodology · Statistics 2016-06-21 Mahsa Ghanbari , Julia Lasserre , Martin Vingron

In neural networks with identical neurons, the matrix of connection weights completely describes the network structure and thereby determines how it is processing information. However, due to the non-linearity of these systems, it is not…

Neurons and Cognition · Quantitative Biology 2018-11-14 Patrick Krauss , Alexandra Zankl , Achim Schilling , Holger Schulze , Claus Metzner

Filamentous polymer networks govern the mechanical properties of many biological materials. Force distributions within these networks are typically highly inhomogeneous and, although the importance of force distributions for structural…

Symmetries (transformations by group actions) are present in many datasets, and leveraging them holds considerable promise for improving predictions in machine learning. In this work, we aim to understand when and how deep networks -- with…

Machine Learning · Computer Science 2025-06-27 Andrea Perin , Stephane Deny

This paper presents novel methods for parameter identification in electrical grids with small numbers of spatially distributed measuring devices, which is an issue for distribution system operators managing aged and not properly mapped…

Systems and Control · Electrical Eng. & Systems 2023-08-21 Steven de Jongh , Felicitas Mueller , Claudio Cañizares , Thomas Leibfried , Kankar Bhattacharya

Nowadays there is a multitude of measures designed to capture different aspects of network structure. To be able to say if the structure of certain network is expected or not, one needs a reference model (null model). One frequently used…

Other Quantitative Biology · Quantitative Biology 2007-05-23 Petter Holme , Jing Zhao

Graphs are fundamental mathematical structures used in various fields to model statistical and physical relationships between data, signals, and processes. In some applications, such as data processing in graphs that represent physical…

Signal Processing · Electrical Eng. & Systems 2024-10-28 Shlomit Shaked , Tirza Routtenberg

Confining an answer to the question whether and how the coherent operation of network elements is determined by the the network structure is the topic of our work. We map the structure of signal flow in directed networks by analysing the…

Data Analysis, Statistics and Probability · Physics 2011-06-22 M. Bányai , L. Négyessy , F. Bazsó
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