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Serializability is a well-understood concurrency control mechanism that eases reasoning about highly-concurrent database programs. Unfortunately, enforcing serializability has a high-performance cost, especially on geographically…

Programming Languages · Computer Science 2021-03-10 Kia Rahmani , Kartik Nagar , Benjamin Delaware , Suresh Jagannathan

DCAlign is a new alignment method able to cope with the conservation and the co-evolution signals that characterize the columns of multiple sequence alignments of homologous sequences. However, the pre-processing steps required to align a…

Quantitative Methods · Quantitative Biology 2023-09-06 Anna Paola Muntoni , Andrea Pagnani

In today's software world with its cornucopia of reusable software libraries, when a programmer is faced with a programming task that they suspect can be completed through the use of a library, they often look for code examples using a…

Software Engineering · Computer Science 2021-10-08 Geert Heyman , Rafael Huysegems , Pascal Justen , Tom Van Cutsem

In the quantum optimisation setting, we build on a scheme introduced by Young et al [PRA 88, 062314, 2013], where physical qubits in multiple copies of a problem encoded into an Ising spin Hamiltonian are linked together to increase the…

Quantum Physics · Physics 2023-07-25 Jemma Bennett , Adam Callison , Tom O'Leary , Mia West , Nicholas Chancellor , Viv Kendon

Program synthesis aims to {\it automatically} find programs from an underlying programming language that satisfy a given specification. While this has the potential to revolutionize computing, how to search over the vast space of programs…

Neural and Evolutionary Computing · Computer Science 2022-03-01 Yuan Yuan , Wolfgang Banzhaf

Logic synthesis, a pivotal stage in chip design, entails optimizing chip specifications encoded in hardware description languages like Verilog into highly efficient implementations using Boolean logic gates. The process involves a…

Machine Learning · Computer Science 2024-01-23 Animesh Basak Chowdhury , Marco Romanelli , Benjamin Tan , Ramesh Karri , Siddharth Garg

Efficiently representing source code is crucial for various software engineering tasks such as code classification and clone detection. Existing approaches primarily use Abstract Syntax Tree (AST), and only a few focus on semantic graphs…

Software Engineering · Computer Science 2023-12-27 Karthik Chandra Swarna , Noble Saji Mathews , Dheeraj Vagavolu , Sridhar Chimalakonda

Developers perform online sensemaking on a daily basis, such as researching and choosing libraries and APIs. Prior research has introduced tools that help developers capture information from various sources and organize it into structures…

Software Engineering · Computer Science 2022-02-07 Michael Xieyang Liu , Aniket Kittur , Brad A. Myers

Real-world graph data environments intrinsically exist noise (e.g., link and structure errors) that inevitably disturb the effectiveness of graph representation and downstream learning tasks. For homogeneous graphs, the latest works use…

Machine Learning · Computer Science 2024-12-25 Xiong Zhang , Cheng Xie , Haoran Duan , Beibei Yu

Motivation: Retrosynthesis planning poses a formidable challenge in the organic chemical industry. Single-step retrosynthesis prediction, a crucial step in the planning process, has witnessed a surge in interest in recent years due to…

Chemical Physics · Physics 2024-04-22 Kaipeng Zeng , Bo yang , Xin Zhao , Yu Zhang , Fan Nie , Xiaokang Yang , Yaohui Jin , Yanyan Xu

Software redesign preserves functionality while improving quality attributes, but manual reuse of code and tests is costly and error-prone, especially in crossrepository redesigns. Focusing on static analyzers where cross-repo redesign…

Software Engineering · Computer Science 2026-04-13 Xiaowen Zhang , Huaien Zhang , Shin Hwei Tan

It is demonstrated earlier that the exact Smith-Waterman algorithm yields more accurate results than the members of the heuristic BLAST family of algorithms. Unfortunately, the Smith-Waterman algorithm is much slower than the BLAST and its…

Genomics · Quantitative Biology 2013-09-10 Gabor Ivan , Daniel Banky , Vince Grolmusz

In-memory computing (IMC) with single instruction multiple data (SIMD) setup enables memory to perform operations on the stored data in parallel to achieve high throughput and energy saving. To instruct a SIMD IMC hardware to compute a…

Emerging Technologies · Computer Science 2024-12-04 Xingyue Qian , Chenyang Lv , Zhezhi He , Weikang Qian

Pattern matching design verification has gained noticeable attention in semiconductor technologies as it can precisely identify more localized problematic areas (weakpoints) in the layout. To address these weakpoints, engineers adopt…

Other Computer Science · Computer Science 2018-05-29 Yongfu Li , Valerio Perez , I-Lun Tseng , Zhao Chuan Lee , Vikas Tripathi , Jason Khaw , Yoong Seang Jonathan Ong

We study the problem of determining whether a given temporal specification can be implemented by a symmetric system, i.e., a system composed from identical components. Symmetry is an important goal in the design of distributed systems,…

Logic in Computer Science · Computer Science 2017-10-17 Ruediger Ehlers , Bernd Finkbeiner

Large Language Models (LLMs) show promise for automated code repair but often struggle with the complex semantic and structural correctness required. We present SynthFix, a hybrid neural-symbolic framework that improves LLM-based…

Software Engineering · Computer Science 2026-04-21 Yifan Zhang , Jieyu Li , Kexin Pei , Yu Huang , Kevin Leach

Initially developed for natural language processing (NLP), Transformers are now widely used for source code processing, due to the format similarity between source code and text. In contrast to natural language, source code is strictly…

Machine Learning · Computer Science 2021-06-25 Nadezhda Chirkova , Sergey Troshin

This paper examines synchronization of computer clocks connected via a data network and proposes a skewless algorithm to synchronize them. Unlike existing solutions, which either estimate and compensate the frequency difference (skew) among…

Optimization and Control · Mathematics 2013-08-21 Enrique Mallada , Xiaoqiao Meng , Michel Hack , Li Zhang , Ao Tang

Large Language Models (LLMs) can generate functional source code from natural-language prompts, but often fail to consistently follow higher-level architectural structures or design patterns. Since LLMs are increasingly used in software…

Software Engineering · Computer Science 2026-05-27 Viktor Kjellberg , Farnaz Fotrousi , Miroslaw Staron

Given datasets from multiple domains, a key challenge is to efficiently exploit these data sources for modeling a target domain. Variants of this problem have been studied in many contexts, such as cross-domain translation and domain…

Machine Learning · Computer Science 2019-12-24 Aditya Grover , Christopher Chute , Rui Shu , Zhangjie Cao , Stefano Ermon
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