Related papers: Edit distance in substitution systems
Shallit and Wang studied deterministic automatic complexity of words. They showed that the automatic Hausdorff dimension $I(\mathbf t)$ of the infinite Thue word satisfies $1/3\le I(\mathbf t)\le 2/3$. We improve that result by showing that…
In this work, we are interested in characterizing typical (generic) dimensional properties of invariant measures associated with the full-shift system, $T$, in a product space whose alphabet is a countable set. More specifically, we show…
Computing the edit distance of two strings is one of the most basic problems in computer science and combinatorial optimization. Tree edit distance is a natural generalization of edit distance in which the task is to compute a measure of…
We present an algorithm for approximating the edit distance between two strings of length $n$ in time $n^{1+\varepsilon}$ up to a constant factor, for any $\varepsilon>0$. Our result completes a research direction set forth in the recent…
The Dynamic Time Warping (DTW) distance is a popular similarity measure for polygonal curves (i.e., sequences of points). It finds many theoretical and practical applications, especially for temporal data, and is known to be a robust,…
In this paper we are interested in indexing texts for substring matching queries with one edit error. That is, given a text $T$ of $n$ characters over an alphabet of size $\sigma$, we are asked to build a data structure that answers the…
We lift metrics over words to metrics over word-to-word transductions, by defining the distance between two transductions as the supremum of the distances of their respective outputs over all inputs. This allows to compare transducers…
We study the problem of approximating edit distance in sublinear time. This is formalized as the $(k,k^c)$-Gap Edit Distance problem, where the input is a pair of strings $X,Y$ and parameters $k,c>1$, and the goal is to return YES if…
In this paper, we design new sublinear-time algorithms for solving the gap edit distance problem and for embedding edit distance to Hamming distance. For the gap edit distance problem, we give an $\tilde{O}(\frac{n}{k}+k^2)$-time greedy…
We present a permutation-invariant distance between atomic configurations, defined through a functional representation of atomic positions. This distance enables to directly compare different atomic environments with an arbitrary number of…
We show that the edit distance between two strings of length $n$ can be computed within a factor of $f(\epsilon)$ in $n^{1+\epsilon}$ time as long as the edit distance is at least $n^{1-\delta}$ for some $\delta(\epsilon) > 0$.
As a fundamental problem of natural language processing, it is important to measure the distance between different documents. Among the existing methods, the Word Mover's Distance (WMD) has shown remarkable success in document semantic…
We consider approximation of diameter of a set $S$ of $n$ points in dimension $m$. E$\tilde{g}$ecio$\tilde{g}$lu and Kalantari \cite{kal} have shown that given any $p \in S$, by computing its farthest in $S$, say $q$, and in turn the…
Given a set of strings over a specified alphabet, identifying a median or consensus string that minimizes the total distance to all input strings is a fundamental data aggregation problem. When the Hamming distance is considered as the…
A bit catastrophe, loosely defined, is when a change in just one character of a string causes a significant change in the size of the compressed string. We study this phenomenon for the Burrows-Wheeler Transform (BWT), a string transform at…
A degenerate or indeterminate string on an alphabet $\Sigma$ is a sequence of non-empty subsets of $\Sigma$. Given a degenerate string $t$ of length $n$, we present a new method based on the Burrows--Wheeler transform for searching for a…
Recently, the first author has extended the definition of the zeta function associated with fractal strings to arbitrary bounded subsets $A$ of the $N$-dimensional Euclidean space ${\mathbb R}^N$, for any integer $N\ge1$. It is defined by…
The dynamic time warping (DTW) is a widely-used method that allows us to efficiently compare two time series that can vary in speed. Given two strings $A$ and $B$ of respective lengths $m$ and $n$, there is a fundamental dynamic programming…
In this paper, we provide a method for determining the asymptotic value of the maximum edit distance from a given hereditary property. This method permits the edit distance to be computed without using Szemer\'edi's Regularity Lemma…
Let $f_W(n)$ be the number of different factors of length $n$ appearing in $W$. A classical result of Morse and Hedlund, stated in 1938, asserts that an infinite word $W$ is ultimately periodic if and only if $f_W(n)\leq n$ for some $n\in…