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Organisms adapt to volatile environments by integrating sensory information with internal memory, yet their information processing is constrained by resource limitations. Such limitations can fundamentally alter optimal estimation…

Biological Physics · Physics 2025-11-14 Takehiro Tottori , Tetsuya J. Kobayashi

Collective action and group formation are fundamental behaviors among both organisms cooperating to maximize their fitness, and people forming socioeconomic organizations. Researchers have extensively explored social interaction structures…

Physics and Society · Physics 2023-11-09 Jordan T Kemp , Adam G Kline , Luís MA Bettencourt

Evolutionary game dynamics is one of the most fruitful frameworks for studying evolution in different disciplines, from Biology to Economics. Within this context, the approach of choice for many researchers is the so-called replicator…

Populations and Evolution · Quantitative Biology 2009-11-14 Carlos P. Roca , José A. Cuesta , Angel Sánchez

A population of individuals with the same genes can present heterogeneous traits (phenotypes). The prevalence of this heterogeneity can be explained as a bet-hedging strategy that improves the population proliferation rate (fitness) in…

Populations and Evolution · Quantitative Biology 2025-08-04 Poulami Chatterjee , Cesar Nieto , Juan Manuel Pedraza , Abhyudai Singh

Inference and learning are commonly cast in terms of optimisation, yet the fundamental constraints governing uncertainty reduction remain unclear. This work presents a first-principles framework inherent to Bayesian updating, termed…

Information Theory · Computer Science 2026-01-22 Takuya Isomura

Intracellular biochemical networks fluctuate dynamically due to various internal and external sources of fluctuation. Dissecting the fluctuation into biologically relevant components is important for understanding how a cell controls and…

Molecular Networks · Quantitative Biology 2016-02-17 Tetsuya J. Kobayashi , Ryo Yokota , Kazuyuki Aihara

All natural things process and transform information. They receive environmental information as input, and transform it into appropriate output responses. Much of science is dedicated to building models of such systems -- algorithmic…

Quantum Physics · Physics 2017-02-14 Jayne Thompson , Andrew J. P. Garner , Vlatko Vedral , Mile Gu

In view of the relation between information and thermodynamics we investigate how much information about an external protocol can be stored in the memory of a stochastic measurement device given an energy budget. We consider a layered…

Quantitative Methods · Quantitative Biology 2015-07-28 Stefano Bo , Marco Del Giudice , Antonio Celani

Experimental design is crucial for inference where limitations in the data collection procedure are present due to cost or other restrictions. Optimal experimental designs determine parameters that in some appropriate sense make the data…

Machine Learning · Statistics 2016-03-11 Panagiotis Tsilifis , Roger G. Ghanem , Paris Hajali

To survive in dynamic and uncertain environments, individuals must develop effective decision strategies that balance information gathering and decision commitment. Models of such strategies often prioritize either optimizing tangible…

Artificial Intelligence · Computer Science 2025-03-26 Nicholas W. Barendregt , Joshua I. Gold , Krešimir Josić , Zachary P. Kilpatrick

We propose a new computational-level objective function for theoretical biology and theoretical neuroscience that combines: reinforcement learning, the study of learning with feedback via rewards; rate-distortion theory, a branch of…

Neurons and Cognition · Quantitative Biology 2025-03-21 Sarah Marzen

Model-based Reinforcement Learning (RL) integrates learning and planning and has received increasing attention in recent years. However, learning the model can incur a significant cost (in terms of sample complexity), due to the need to…

Machine Learning · Computer Science 2023-03-17 Jiajun Shen , Kananart Kuwaranancharoen , Raid Ayoub , Pietro Mercati , Shreyas Sundaram

Information is a key concept in evolutionary biology. Information is stored in biological organism's genomes, and used to generate the organism as well as to maintain and control it. Information is also "that which evolves". When a…

Populations and Evolution · Quantitative Biology 2012-07-25 Christoph Adami

Modern recommender systems lie at the heart of complex ecosystems that couple the behavior of users, content providers, advertisers, and other actors. Despite this, the focus of the majority of recommender research -- and most practical…

Artificial Intelligence · Computer Science 2023-09-25 Craig Boutilier , Martin Mladenov , Guy Tennenholtz

Information-driven engines that rectify thermal fluctuations are a modern realization of the Maxwell-demon thought experiment. We introduce a simple design based on a heavy colloidal particle, held by an optical trap and immersed in water.…

Statistical Mechanics · Physics 2021-05-21 Tushar K. Saha , Joseph N. E. Lucero , Jannik Ehrich , David A. Sivak , John Bechhoefer

We develop a novel framework of bounded rationality under cognitive frictions that studies learning over optimal behavior through both deliberative reasoning and accumulated experiences. Using both types of information, agents engage in…

Theoretical Economics · Economics 2024-03-28 Cosmin Ilut , Rosen Valchev

In a constantly changing world, animals must account for environmental volatility when making decisions. To appropriately discount older, irrelevant information, they need to learn the rate at which the environment changes. We develop an…

Neurons and Cognition · Quantitative Biology 2017-01-12 Adrian E Radillo , Alan Veliz-Cuba , Kresimir Josic , Zachary P Kilpatrick

Thermodynamics establishes that information acquired through measurement can be converted into work, as exemplified by Maxwell's demon and Szilard engines. Most experimental realizations of information engines, however, implicitly assume…

Soft Condensed Matter · Physics 2026-03-09 Lokesh Muruga , Felix Ginot , Sarah A. M. Loos , Clemens Bechinger

Human perceptual and cognitive abilities are limited resources. Today, in the age of cheap information --cheap to produce, to manipulate, to disseminate--, this cognitive bottleneck translates into hypercompetition for visibility among…

Information ratchets extract work from heat baths using low entropy information reservoirs. We find that the structure of the reservoirs affects both their performance and phase diagram. By deriving exact probabilities of recurrence in…

Statistical Mechanics · Physics 2018-08-29 Richard E. Spinney , Mikhail Prokopenko , Dominique Chu
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