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Europe's healthcare systems require enhanced interoperability and digitalization, driving a demand for innovative solutions to process legacy clinical data. This paper presents the results of our project, which aims to leverage Large…

Computation and Language · Computer Science 2025-07-09 Aynur Guluzade , Naguib Heiba , Zeyd Boukhers , Florim Hamiti , Jahid Hasan Polash , Yehya Mohamad , Carlos A Velasco

BERT is a cutting-edge language representation model pre-trained by a large corpus, which achieves superior performances on various natural language understanding tasks. However, a major blocking issue of applying BERT to online services is…

Computation and Language · Computer Science 2020-10-22 Yihuan Mao , Yujing Wang , Chufan Wu , Chen Zhang , Yang Wang , Yaming Yang , Quanlu Zhang , Yunhai Tong , Jing Bai

Despite their strong linguistic capabilities, Large Language Models (LLMs) are computationally demanding and require substantial resources for fine-tuning, which is unadapted to privacy and budget constraints of many healthcare settings. To…

Computation and Language · Computer Science 2026-04-30 Pierre Epron , Adrien Coulet , Mehwish Alam

An important issue impacting healthcare is a lack of available experts. Machine learning (ML) models could resolve this by aiding in diagnosing patients. However, creating datasets large enough to train these models is expensive. We…

Computation and Language · Computer Science 2024-05-14 Chancellor R. Woolsey , Prakash Bisht , Joshua Rothman , Gondy Leroy

Large Language Models (LLMs) have showcased exceptional capabilities in various domains, attracting significant interest from both academia and industry. Despite their impressive performance, the substantial size and computational demands…

Computation and Language · Computer Science 2024-07-03 Chuanpeng Yang , Wang Lu , Yao Zhu , Yidong Wang , Qian Chen , Chenlong Gao , Bingjie Yan , Yiqiang Chen

The practice of fine-tuning Pre-trained Language Models (PLMs) from general or domain-specific data to a specific task with limited resources, has gained popularity within the field of natural language processing (NLP). In this work, we…

Computation and Language · Computer Science 2023-10-31 Samuel Belkadi , Lifeng Han , Yuping Wu , Goran Nenadic

Despite the effectiveness of utilizing the BERT model for document ranking, the high computational cost of such approaches limits their uses. To this end, this paper first empirically investigates the effectiveness of two knowledge…

Information Retrieval · Computer Science 2023-05-05 Xuanang Chen , Ben He , Kai Hui , Le Sun , Yingfei Sun

General-purpose Large Language Models (LLMs) are frequently fine-tuned through supervised fine-tuning (SFT) to enhance performance in specific domains. Better results can be achieved by distilling the chain-of-thought of a larger model at…

Machine Learning · Computer Science 2026-03-24 Andrey Goncharov , Daniil Vyazhev , Petr Sychev , Edvard Khalafyan , Alexey Zaytsev

Clinical notes contain an abundance of important but not-readily accessible information about patients. Systems to automatically extract this information rely on large amounts of training data for which their exists limited resources to…

Computation and Language · Computer Science 2020-04-23 Andriy Mulyar , Bridget T. McInnes

In recent years, large language models (LLMs) have shown exceptional capabilities across various natural language processing (NLP) tasks. However, such impressive performance often comes with the trade-off of an increased parameter size,…

Computation and Language · Computer Science 2025-02-19 Minchong Li , Feng Zhou , Xiaohui Song

Despite the advanced intelligence abilities of large language models (LLMs) in various applications, they still face significant computational and storage demands. Knowledge Distillation (KD) has emerged as an effective strategy to improve…

Byte Language Models (BLMs) have emerged as a promising direction for scaling language models beyond tokenization. However, existing BLMs typically require training from scratch on trillions of bytes, making them prohibitively expensive. In…

Computation and Language · Computer Science 2026-02-03 Zishuo Bao , Jiaqi Leng , Junxiong Wang , Bowen Peng , Yucheng Lu

Clinical texts, represented in electronic medical records (EMRs), contain rich medical information and are essential for disease prediction, personalised information recommendation, clinical decision support, and medication pattern mining…

Computation and Language · Computer Science 2023-10-10 Hangyu Tu , Lifeng Han , Goran Nenadic

This study proposes a knowledge distillation algorithm based on large language models and feature alignment, aiming to effectively transfer the knowledge of large pre-trained models into lightweight student models, thereby reducing…

Computation and Language · Computer Science 2024-12-30 Shuo Wang , Chihang Wang , Jia Gao , Zhen Qi , Hongye Zheng , Xiaoxuan Liao

Complex deep learning models now achieve state of the art performance for many document retrieval tasks. The best models process the query or claim jointly with the document. However for fast scalable search it is desirable to have document…

Information Retrieval · Computer Science 2019-11-26 Siamak Shakeri , Abhinav Sethy , Cheng Cheng

Natural language processing (NLP) of clinical trial documents can be useful in new trial design. Here we identify entity types relevant to clinical trial design and propose a framework called CT-BERT for information extraction from clinical…

Quantitative Methods · Quantitative Biology 2021-10-20 Xiong Liu , Greg L. Hersch , Iya Khalil , Murthy Devarakonda

Large Language Models (LLMs) have revolutionized various sectors, including healthcare where they are employed in diverse applications. Their utility is particularly significant in the context of rare diseases, where data scarcity,…

Computation and Language · Computer Science 2024-08-20 Qiuhao Lu , Rui Li , Andrew Wen , Jinlian Wang , Liwei Wang , Hongfang Liu

Extracting sections from clinical notes is crucial for downstream analysis but is challenging due to variability in formatting and labor-intensive nature of manual sectioning. While proprietary large language models (LLMs) have shown…

Computation and Language · Computer Science 2025-01-27 Joshua Davis , Thomas Sounack , Kate Sciacca , Jessie M Brain , Brigitte N Durieux , Nicole D Agaronnik , Charlotta Lindvall

Electronic Health Records are large repositories of valuable clinical data, with a significant portion stored in unstructured text format. This textual data includes clinical events (e.g., disorders, symptoms, findings, medications and…

Computation and Language · Computer Science 2024-09-02 Shubham Agarwal , Thomas Searle , Mart Ratas , Anthony Shek , James Teo , Richard Dobson

This paper presents the overview of the development and fine-tuning of large language models (LLMs) designed specifically for answering medical questions. We are mainly improving the accuracy and efficiency of providing reliable answers to…

Computation and Language · Computer Science 2025-01-30 Aysegul Ucar , Soumik Nayak , Anunak Roy , Burak Taşcı , Gülay Taşcı
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