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The quest for efficient and robust deep learning models for molecular systems representation is increasingly critical in scientific exploration. The advent of message passing neural networks has marked a transformative era in graph-based…

Computational Physics · Physics 2026-01-05 Jian Chang , Shuze Zhu

The combination of deep learning algorithm and materials science has made significant progress in predicting novel materials and understanding various behaviours of materials. Here, we introduced a new model called as the Crystal…

Materials Science · Physics 2024-05-21 Zijian Du , Luozhijie Jin , Le Shu , Yan Cen , Yuanfeng Xu , Yongfeng Mei , Hao Zhang

Graph neural network interatomic potentials (GNN-IPs) are gaining significant attention due to their capability of learning from large datasets. Specifically, universal interatomic potentials based on GNN, usually trained with crystalline…

Materials Science · Physics 2025-01-08 Sungwoo Kang

Weight pruning is a technique to make Deep Neural Network (DNN) inference more computationally efficient by reducing the number of model parameters over the course of training. However, most weight pruning techniques generally does not…

Machine Learning · Computer Science 2022-02-03 Bradley McDanel , Helia Dinh , John Magallanes

The increasing scale and complexity of integrated circuit design have led to increased challenges in Electronic Design Automation (EDA). Graph Neural Networks (GNNs) have emerged as a promising approach to assist EDA design as circuits can…

Machine Learning · Computer Science 2025-08-26 Yuebo Luo , Shiyang Li , Junran Tao , Kiran Thorat , Xi Xie , Hongwu Peng , Nuo Xu , Caiwen Ding , Shaoyi Huang

Graph neural networks (GNNs) are widely used as surrogates for costly experiments and first-principles simulations to study the behavior of compounds at atomistic scale, and their architectural complexity is constantly increasing to enable…

Machine Learning · Computer Science 2026-05-04 Arindam Chowdhury , Massimiliano Lupo Pasini

It is important to scale out deep neural network (DNN) training for reducing model training time. The high communication overhead is one of the major performance bottlenecks for distributed DNN training across multiple GPUs. Our…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-10-23 Peng Sun , Wansen Feng , Ruobing Han , Shengen Yan , Yonggang Wen

Graph Neural Networks (GNNs) are powerful deep learning models to generate node embeddings on graphs. When applying deep GNNs on large graphs, it is still challenging to perform training in an efficient and scalable way. We propose a novel…

Machine Learning · Computer Science 2020-10-08 Hanqing Zeng , Hongkuan Zhou , Ajitesh Srivastava , Rajgopal Kannan , Viktor Prasanna

Graph Neural Networks (GNNs) are vital for learning from graph-structured data, enabling applications in network analysis, recommendation systems, and speech analytics. Deploying them on edge devices like client PCs and laptops enhances…

Machine Learning · Computer Science 2025-02-14 Arghadip Das , Shamik Kundu , Arnab Raha , Soumendu Ghosh , Deepak Mathaikutty , Vijay Raghunathan

Computational materials discovery is limited by the high cost of first-principles calculations. Machine learning (ML) potentials that predict energies from crystal structures are promising, but existing methods face computational…

Deep neural networks have enabled researchers to create powerful generalized frameworks, such as transformers, that can be used to solve well-studied problems in various application domains, such as text and image. However, such generalized…

Machine Learning · Computer Science 2025-02-12 Rudrajit Dawn , Madhusudan Ghosh , Partha Basuchowdhuri , Sudip Kumar Naskar

In the last few years, the memory requirements to train state-of-the-art neural networks have far exceeded the DRAM capacities of modern hardware accelerators. This has necessitated the development of efficient algorithms to train these…

Machine Learning · Computer Science 2023-05-16 Siddharth Singh , Abhinav Bhatele

We introduce a novel masked pre-training technique for graph neural networks (GNNs) applied to computational fluid dynamics (CFD) problems. By randomly masking up to 40\% of input mesh nodes during pre-training, we force the model to learn…

Machine Learning · Computer Science 2025-08-27 Paul Garnier , Vincent Lannelongue , Jonathan Viquerat , Elie Hachem

Training machine learning interatomic potentials that are both computationally and data-efficient is a key challenge for enabling their routine use in atomistic simulations. To this effect, we introduce franken, a scalable and lightweight…

Full batch training of Graph Convolutional Network (GCN) models is not feasible on a single GPU for large graphs containing tens of millions of vertices or more. Recent work has shown that, for the graphs used in the machine learning…

Machine Learning · Computer Science 2021-10-19 Muhammed Fatih Balın , Kaan Sancak , Ümit V. Çatalyürek

Graph neural networks (GNNs) have recently exploded in popularity thanks to their broad applicability to graph-related problems such as quantum chemistry, drug discovery, and high energy physics. However, meeting demand for novel GNN models…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-20 Rishov Sarkar , Stefan Abi-Karam , Yuqi He , Lakshmi Sathidevi , Cong Hao

We present distributed algorithms for training dynamic Graph Neural Networks (GNN) on large scale graphs spanning multi-node, multi-GPU systems. To the best of our knowledge, this is the first scaling study on dynamic GNN. We devise…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-17 Venkatesan T. Chakaravarthy , Shivmaran S. Pandian , Saurabh Raje , Yogish Sabharwal , Toyotaro Suzumura , Shashanka Ubaru

Coarse graining (CG) enables the investigation of molecular properties for larger systems and at longer timescales than the ones attainable at the atomistic resolution. Machine learning techniques have been recently proposed to learn CG…

Computational Physics · Physics 2022-09-28 Eleonora Ricci , George Giannakopoulos , Vangelis Karkaletsis , Doros N. Theodorou , Niki Vergadou

Dynamic Graph Neural Network (DGNN) has shown a strong capability of learning dynamic graphs by exploiting both spatial and temporal features. Although DGNN has recently received considerable attention by AI community and various DGNN…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-08 Fahao Chen , Peng Li , Celimuge Wu

The rapid development of universal machine learning interatomic potentials (uMLIPs) has demonstrated the possibility for generalizable learning of the universal potential energy surface. In principle, the accuracy of uMLIPs can be further…

Materials Science · Physics 2025-04-09 Xu Huang , Bowen Deng , Peichen Zhong , Aaron D. Kaplan , Kristin A. Persson , Gerbrand Ceder