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Living cells respond to mechanical changes in the matrix surrounding them by applying contractile forces that are in turn transmitted to distant cells. We calculate the mechanical work that each cell performs in order to deform the matrix,…

Soft Condensed Matter · Physics 2021-08-17 Chaviva Sirote , Yair Shokef

We provide a general framework to construct finite dimensional approximations of the space of convex functions, which also applies to the space of c-convex functions and to the space of support functions of convex bodies. We give estimates…

Numerical Analysis · Mathematics 2014-03-11 Quentin Mérigot , Edouard Oudet

We consider the numerical computation of a variational problem that arises from materials science. The target functional is a type of elastic energy that is influenced by obstacles and adhesion. Owing to its strong nonlinearity and…

Numerical Analysis · Mathematics 2016-04-13 T. Kemmochi

We analyze the isotropic compaction of mixtures composed of rigid and deformable incompressible particles by the non-smooth contact dynamics approach (NSCD). The deformable bodies are simulated using a hyper-elastic neo-Hookean constitutive…

Soft Condensed Matter · Physics 2020-09-30 Manuel Cárdenas-Barrantes , David Cantor , Jonathan Barés , Mathieu Renouf , Emilien Azéma

In our analysis, we show that what Cottenden et al. accomplish is the derivation of the ordinary capstan equation, and a solution to a dynamic membrane with both a zero-Poisson's ratio and a zero-mass density on a rigid right-circular cone.…

Medical Physics · Physics 2021-01-20 Kavinda Jayawardana

This study addresses the modelling of elastic bodies, particularly when the relaxed configuration is unknown or non-existent. We adopt the theory of initially stressed materials, incorporating the deformation gradient and stress state of…

Soft Condensed Matter · Physics 2024-11-28 M. Magri , D. Riccobelli

We present a minimalistic approach to simulations of force transmission through granular systems. We start from a configuration containing cohesive (tensile) contact forces and use an adaptive procedure to find the stable configuration with…

Soft Condensed Matter · Physics 2009-10-31 Alexei V. Tkachenko , Thomas A. Witten

We develop a universally applicable embedded boundary finite difference method, which results in a symmetric positive definite linear system and does not suffer from small cell stiffness. Our discretization is efficient for the wave, heat…

Numerical Analysis · Mathematics 2022-04-14 Zhichao Peng , Daniel Appelö , Shuang Liu

Recent years have seen the emergence of nonlinear methods for solving partial differential equations (PDEs), such as physics-informed neural networks (PINNs). While these approaches often perform well in practice, their theoretical analysis…

Numerical Analysis · Mathematics 2025-08-27 Alexandre Magueresse , Santiago Badia

A constitutive relation between stress and strain relative to a reference state is the basic assumption of elasticity theory. However, in living matter, force generation is governed by motor molecule activity, which does not depend on…

Soft Condensed Matter · Physics 2026-03-17 Nikolas H. Claussen , Fridtjof Brauns , Boris I. Shraiman

Vertex models are a popular approach to modeling the mechanical and dynamical properties of dense biological tissues, describing the tissue as a network of connected polygons representing the cells. Recently a class of two-dimensional…

Soft Condensed Matter · Physics 2017-08-14 Daniel M. Sussman , Matthias Merkel

The vertex model is widely used to simulate the mechanical properties of confluent epithelia and other multicellular tissues. This inherently discrete framework allows a Cauchy stress to be attributed to each cell, and its symmetric…

Tissues and Organs · Quantitative Biology 2022-10-10 Oliver E. Jensen , Christopher K. Revell

This paper focuses on the dynamical properties of delayed complex balanced systems. We first study the relationship between the stoichiometric compatibility classes of delayed and non-delayed systems. Using this relation we give another way…

Dynamical Systems · Mathematics 2024-03-14 Xiaoyu Zhang , Tian Zhang , Chuanhou Gao

A recent paper [J. A. Evans, D. Kamensky, Y. Bazilevs, "Variational multiscale modeling with discretely divergence-free subscales", Computers & Mathematics with Applications, 80 (2020) 2517-2537] introduced a novel stabilized finite element…

Numerical Analysis · Mathematics 2021-12-21 Sajje Lee Calfy , John A. Evans , David Kamensky

We detail in this article the necessity of a change of paradigm for the delay-robust control of systems composed of two linear first order hyperbolic equations. One must go back to the classical trade-off between convergence rate and…

Optimization and Control · Mathematics 2017-09-14 Jean Auriol , Jakob Ulf , Philippe Martin , Florent Meglio

We consider the unilateral contact problem between an elastic body and a rigid foundation in a description that includes both Tresca and Coulomb friction conditions. For this problem, we present an a posteriori error analysis based on an…

Numerical Analysis · Mathematics 2024-01-08 Ilaria Fontana , Daniele A. Di Pietro

In this paper, we propose a linear and monolithic finite element method for the approximation of an incompressible viscous fluid interacting with an elastic and deforming plate. We use the arbitrary Lagrangian-Eulerian (ALE) approach that…

Numerical Analysis · Mathematics 2023-01-13 Sebastian Schwarzacher , Bangwei She , Karel Tuma

There are many physical processes that have inherent discontinuities in their mathematical formulations. This paper is motivated by the specific case of collisions between two rigid or deformable bodies and the intrinsic nature of that…

Machine Learning · Computer Science 2023-06-22 Daniel Johnson , Ronald Fedkiw

The adhesive and frictional response of an AFM tip connected to a substrate through supramolecular host-guest complexes is investigated by dynamic Monte Carlo simulations. The variation of the pull-off force with the unloading rate recently…

Soft Condensed Matter · Physics 2016-04-13 Roberto Guerra , Andrea Benassi , Andrea Vanossi , Ming Ma , Michael Urbakh

We discuss the nonlinear dynamics and fluctuations of interfaces with bending rigidity under the competing attractions of two walls with arbitrary permeabilities. This system mimics the dynamics of confined membranes. We use a two-dimension…

Soft Condensed Matter · Physics 2015-09-02 Thomas Le Goff , Paolo Politi , Olivier Pierre-Louis