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This thesis investigates three biologically inspired operations: prefix-suffix duplication, bounded prefix-suffix duplication, and prefix-suffix-square completion. Duplication, a common genetic mutation, involves repeating DNA sequences and…

Data Structures and Algorithms · Computer Science 2025-09-30 Marius Dumitran

We show that for every $n \geq 1$ and over any finite alphabet, there is a word whose circular factors of length $n$ have a one-to-one correspondence with the set of primitive words. In particular, we prove that such a word can be obtained…

Combinatorics · Mathematics 2019-12-03 Yu Hin Au

We characterize the complexity functions of subshifts up to asymptotic equivalence. The complexity function of every aperiodic function is non-decreasing, submultiplicative and grows at least linearly. We prove that conversely, every…

Dynamical Systems · Mathematics 2025-09-24 Be'eri Greenfeld , Carlos Gustavo Moreira , Efim Zelmanov

Permutation Pattern Matching (or PPM) is a decision problem whose input is a pair of permutations $\pi$ and $\tau$, represented as sequences of integers, and the task is to determine whether $\tau$ contains a subsequence order-isomorphic to…

Combinatorics · Mathematics 2016-08-02 Vít Jelínek , Jan Kynčl

Superpermutations are words over a finite alphabet containing every permutation as a factor. Finding the minimal length of a superpermutation is still an open problem. In this article, we introduce superpermutations matrices. We establish a…

Combinatorics · Mathematics 2019-08-14 Guillaume Dumas

We provide an exact estimate on the maximal subword complexity for quasiperiodic infinite words. To this end we give a representation of the set of finite and of infinite words having a certain quasiperiod q via a finite language derived…

Formal Languages and Automata Theory · Computer Science 2010-08-11 Ronny Polley , Ludwig Staiger

In this paper, we study some new factorizations of period-doubling sequences over a $k$-letter alphabet, where $k\geq 2$. First, we define the combinatorial and arithmetic properties of these sequences. Then, we define the kernel words of…

Combinatorics · Mathematics 2025-11-27 K. Ernest Bognini , Hamdi Ammar

For any integer $k>2$, the infinite $k$-bonacci word $W^{(k)}$, on the infinite alphabet is defined as the fixed point of the morphism $\varphi_k:\mathbb{N}\rightarrow \mathbb{N}^2 \cup \mathbb{N}$, where \begin{equation*} \varphi_k(ki+j) =…

Combinatorics · Mathematics 2019-12-12 Narges Ghareghani , Pouyeh Sharifani

In this paper, we use subword complexes to provide a uniform approach to finite type cluster complexes and multi-associahedra. We introduce, for any finite Coxeter group and any nonnegative integer k, a spherical subword complex called…

Combinatorics · Mathematics 2013-07-11 Cesar Ceballos , Jean-Philippe Labbé , Christian Stump

In this paper we study some additive properties of subsets of the set $\nats$ of positive integers: A subset $A$ of $\nats$ is called {\it $k$-summable} (where $k\in\ben$) if $A$ contains $\textstyle \big{\sum_{n\in F}x_n | \emp\neq…

Combinatorics · Mathematics 2013-03-05 Michelangelo Bucci , Neil Hindman , Svetlana Puzynina , Luca Q. Zamboni

We introduce a notion of complexity for systems of linear forms, called sequential Cauchy-Schwarz complexity, which is parametrized by two positive integers $k,\ell$ and refines the notion of Cauchy-Schwarz complexity introduced by Green…

Combinatorics · Mathematics 2022-07-05 Pablo Candela , Diego González-Sánchez , Balázs Szegedy

The subword complexity of a word $w$ over a finite alphabet $\mathcal{A}$ is a function that assigns for each positive integer $n$, the number of distinct subwords of length $n$ in $w$. The subword complexity of a word is a good measure of…

Combinatorics · Mathematics 2014-09-16 Hannah Vogel

Good words are binary words avoiding factors 11 and 1001, and patterns 0000 and 00010100. We show that good words bear the same relationship to the period-doubling sequence that overlap-free words bear to the Thue-Morse sequence. We prove…

Combinatorics · Mathematics 2023-03-28 James D. Currie

A set X of partial words over a finite alphabet A is called unavoidable if every two-sided infinite word over A has a factor compatible with an element of X. Unlike the case of a set of words without holes, the problem of deciding whether…

Formal Languages and Automata Theory · Computer Science 2017-08-23 Joey Becker , F. Blanchet-Sadri , Laure Flapan , Stephen Watkins

An infinite word has the property $R_m$ if every factor has exactly $m$ return words. Vuillon showed that $R_2$ characterizes Sturmian words. We prove that a word satisfies $R_m$ if its complexity function is $(m-1)n+1$ and if it contains…

Combinatorics · Mathematics 2007-09-27 Lubomira Balkova , Edita Pelantova , Wolfgang Steiner

Currie and Saari initiated the study of least periods of infinite words, and they showed that every integer n >= 1 is a least period of the Thue-Morse sequence. We generalize this result to show that the characteristic sequence of least…

Formal Languages and Automata Theory · Computer Science 2012-07-24 Daniel Goc , Jeffrey Shallit

We prove various results about the largest exponent of a repetition in a factor of the Thue-Morse word, when that factor is considered as a circular word. Our results confirm and generalize previous results of Fitzpatrick and Aberkane &…

Formal Languages and Automata Theory · Computer Science 2018-08-09 Jeffrey Shallit , Ramin Zarifi

Smooth words over an alphabet of non-negative integers $\{a,b\}$ are infinite words that are infinitely derivable, the most famous example being the Oldenburger-Kolakoski word over $\{1,2\}$. The main way to study their language is to…

Formal Languages and Automata Theory · Computer Science 2026-05-01 Julien Cassaigne , Raphaël Henry

Covering arrays for words of length $t$ over a $d$ letter alphabet are $k \times n$ arrays with entries from the alphabet so that for each choice of $t$ columns, each of the $d^t$ $t$-letter words appears at least once among the rows of the…

Combinatorics · Mathematics 2018-03-20 Joshua Cassels , Anant Godbole

Taking the product of (2n+1)/(2n+2) raised to the power +1 or -1 according to the n-th term of the Thue-Morse sequence gives rise to an infinite product P while replacing (2n+1)/(2n+2) with (2n)/(2n+1) yields an infinite product Q, where P…

Number Theory · Mathematics 2014-07-01 Jean-Paul Allouche