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Large language models (LLMs) are increasingly applied to materials science questions, including literature comprehension, property prediction, materials discovery and alloy design. At the same time, a wide range of physics-based…

Materials Science · Physics 2025-12-17 Siyu Liu , Bo Hu , Beilin Ye , Jiamin Xu , David J. Srolovitz , Tongqi Wen

Despite their success in many natural language tasks, solving math problems remains a significant challenge for large language models (LLMs). A large gap exists between LLMs' pass-at-one and pass-at-N performance in solving math problems,…

Computation and Language · Computer Science 2023-10-17 Yixin Liu , Avi Singh , C. Daniel Freeman , John D. Co-Reyes , Peter J. Liu

Large language models (LLMs) are playing an increasingly important role in science and engineering. For example, their ability to parse and understand human and computer languages makes them powerful interpreters and their use in…

Materials Science · Physics 2023-10-19 Juan C. Verduzco , Ethan Holbrook , Alejandro Strachan

Large language models (LLMs) still grapple with complex tasks like mathematical reasoning. Despite significant efforts invested in improving prefix prompts or reasoning process, the crucial role of problem context might have been neglected.…

Computation and Language · Computer Science 2024-03-28 Haoran Liao , Jidong Tian , Shaohua Hu , Hao He , Yaohui Jin

Recent advancements in Large Language Models (LLMs) have significantly enhanced their ability to process long contexts, yet a notable gap remains in generating long, aligned outputs. This limitation stems from a training gap where…

Computation and Language · Computer Science 2024-11-01 Shanghaoran Quan , Tianyi Tang , Bowen Yu , An Yang , Dayiheng Liu , Bofei Gao , Jianhong Tu , Yichang Zhang , Jingren Zhou , Junyang Lin

Pre-trained language models for code (PLMCs) have gained attention in recent research. These models are pre-trained on large-scale datasets using multi-modal objectives. However, fine-tuning them requires extensive supervision and is…

Computation and Language · Computer Science 2023-05-11 Hung Quoc To , Nghi D. Q. Bui , Jin Guo , Tien N. Nguyen

Machine learning has revolutionized polymer science by enabling rapid property prediction and generative design. Large language models (LLMs) offer further opportunities in polymer informatics by simplifying workflows that traditionally…

Computational Engineering, Finance, and Science · Computer Science 2026-02-20 Sonakshi Gupta , Akhlak Mahmood , Shivank Shukla , Rampi Ramprasad

Protein sequences are abundant in repeating segments, both as exact copies and as approximate segments with mutations. These repeats are important for protein structure and function, motivating decades of algorithmic work on repeat…

Machine Learning · Computer Science 2026-05-26 Gal Pomerants , Yaniv Nikankin , Anja Reusch , Tomer Tsaban , Ora Schueler-Furman , Yonatan Belinkov

Large Language Models (LLMs) have shown strong performance in automated source-to-target code translation through pretraining on extensive code corpora. However, mainstream LLM-based code translation methods suffer from two critical…

Software Engineering · Computer Science 2025-10-13 He Jiang , Yufu Wang , Hao Lin , Peiyu Zou , Zhide Zhou , Ang Jia , Xiaochen Li , Zhilei Ren

Pre-trained language models (PLMs) have achieved remarkable success in natural language generation (NLG) tasks. Up to now, most NLG-oriented PLMs are pre-trained in an unsupervised manner using the large-scale general corpus. In the…

Computation and Language · Computer Science 2023-05-30 Tianyi Tang , Junyi Li , Wayne Xin Zhao , Ji-Rong Wen

While scaling laws have been continuously validated in large language models (LLMs) with increasing model parameters, the inherent tension between the inference demands of LLMs and the limited resources of edge devices poses a critical…

Background: Identification of the interactions and regulatory relations between biomolecules play pivotal roles in understanding complex biological systems and the mechanisms underlying diverse biological functions. However, the collection…

Computation and Language · Computer Science 2025-04-24 Gilchan Park , Byung-Jun Yoon , Xihaier Luo , Vanessa López-Marrero , Shinjae Yoo , Shantenu Jha

The disruptive technology provided by large-scale pre-trained language models (LLMs) such as ChatGPT or GPT-4 has received significant attention in several application domains, often with an emphasis on high-level opportunities and…

Human-Computer Interaction · Computer Science 2023-06-27 Philippe J. Giabbanelli

Molecular Property Prediction (MPP) is a fundamental problem in drug discovery that has recently attracted growing attention. Large Language Models (LLMs), known for their impressive proficiency across domains, show promise as generalist…

Machine Learning · Computer Science 2026-05-28 Khiem Le , Sreejata Dey , Marcos Martínez Galindo , Vanessa Lopez , Ting Hua , Nitesh V. Chawla , Hoang Thanh Lam

Most current molecular language models transfer the masked language model or image-text generation model from natural language processing to molecular field. However, molecules are not solely characterized by atom/bond symbols; they…

Emerging Technologies · Computer Science 2024-11-26 Yifan Wu , Min Zeng , Yang Li , Yang Zhang , Min Li

Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Traditional physics-based simulation methods often struggle with…

Biomolecules · Quantitative Biology 2025-03-14 Jiarui Lu , Xiaoyin Chen , Stephen Zhewen Lu , Chence Shi , Hongyu Guo , Yoshua Bengio , Jian Tang

Large Language Models (LLMs) have become a cornerstone in Natural Language Processing (NLP), achieving impressive performance in text generation. Their token-level representations capture rich, human-aligned semantics. However, pooling…

Computation and Language · Computer Science 2025-09-25 Benedikt Roth , Stephan Rappensperger , Tianming Qiu , Hamza Imamović , Julian Wörmann , Hao Shen

Large language models (LLMs) sometimes fail to respond appropriately to deterministic tasks -- such as counting or forming acronyms -- because the implicit prior distribution they have learned over sequences of tokens influences their…

Computation and Language · Computer Science 2025-04-18 Liyi Zhang , Veniamin Veselovsky , R. Thomas McCoy , Thomas L. Griffiths

Trained on the large corpus, pre-trained language models (PLMs) can capture different levels of concepts in context and hence generate universal language representations. They can benefit multiple downstream natural language processing…

Computation and Language · Computer Science 2021-10-15 Nankai Lin , Yingwen Fu , Chuwei Chen , Ziyu Yang , Shengyi Jiang
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