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Related papers: MOL-Mamba: Enhancing Molecular Representation with…

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Graph Neural Networks (GNNs) have shown remarkable success in molecular tasks, yet their interpretability remains challenging. Traditional model-level explanation methods like XGNN and GNNInterpreter often fail to identify valid…

Machine Learning · Computer Science 2025-04-25 Zhaoning Yu , Hongyang Gao

EEG-based emotion recognition struggles with capturing multi-scale spatiotemporal dynamics and ensuring computational efficiency for real-time applications. Existing methods often oversimplify temporal granularity and spatial hierarchies,…

Signal Processing · Electrical Eng. & Systems 2025-07-23 Hanwen Liu , Yifeng Gong , Zuwei Yan , Zeheng Zhuang , Jiaxuan Lu

Applying pre-trained models to assist point cloud understanding has recently become a mainstream paradigm in 3D perception. However, existing application strategies are straightforward, utilizing only the final output of the pre-trained…

Computer Vision and Pattern Recognition · Computer Science 2025-05-28 Yaohua Zha , Yanzi Wang , Hang Guo , Jinpeng Wang , Tao Dai , Bin Chen , Zhihao Ouyang , Xue Yuerong , Ke Chen , Shu-Tao Xia

Virtual screening plays a critical role in modern drug discovery by enabling the identification of promising candidate molecules for experimental validation. Traditional machine learning methods such, as Support Vector Machines (SVM) and…

Machine Learning · Computer Science 2025-04-29 Radia Berreziga , Mohammed Brahimi , Khairedine Kraim , Hamid Azzoune

As one of the most representative DL techniques, Transformer architecture has empowered numerous advanced models, especially the large language models (LLMs) that comprise billions of parameters, becoming a cornerstone in deep learning.…

Machine Learning · Computer Science 2026-04-07 Haohao Qu , Liangbo Ning , Rui An , Wenqi Fan , Tyler Derr , Hui Liu , Xin Xu , Qing Li

Cross-modality fusing complementary information from different modalities effectively improves object detection performance, making it more useful and robust for a wider range of applications. Existing fusion strategies combine different…

Computer Vision and Pattern Recognition · Computer Science 2025-07-23 Wenhao Dong , Haodong Zhu , Shaohui Lin , Xiaoyan Luo , Yunhang Shen , Xuhui Liu , Juan Zhang , Guodong Guo , Baochang Zhang

Recent research in molecular discovery has primarily been devoted to small, drug-like molecules, leaving many similarly important applications in material design without adequate technology. These applications often rely on more complex…

Neural networks leverage robust internal representations in order to generalise. Learning them is difficult, and often requires a large training set that covers the data distribution densely. We study a common setting where our task is not…

As they carry great potential for modeling complex interactions, graph neural network (GNN)-based methods have been widely used to predict quantum mechanical properties of molecules. Most of the existing methods treat molecules as molecular…

Machine Learning · Computer Science 2020-09-29 Zeren Shui , George Karypis

Accurate medical image segmentation demands the integration of multi-scale information, spanning from local features to global dependencies. However, it is challenging for existing methods to model long-range global information, where…

Image and Video Processing · Electrical Eng. & Systems 2024-03-07 Jiarun Liu , Hao Yang , Hong-Yu Zhou , Yan Xi , Lequan Yu , Yizhou Yu , Yong Liang , Guangming Shi , Shaoting Zhang , Hairong Zheng , Shanshan Wang

Leveraging domain knowledge including fingerprints and functional groups in molecular representation learning is crucial for chemical property prediction and drug discovery. When modeling the relation between graph structure and molecular…

Machine Learning · Computer Science 2021-03-25 Yin Fang , Haihong Yang , Xiang Zhuang , Xin Shao , Xiaohui Fan , Huajun Chen

Self-supervised pretraining is promising for large-scale neuroimaging, yet the impact of region-aware masking and hybrid sequence modeling remains underexplored. In this work, we introduce Rhamba, a region-aware pretraining framework that…

Protein representation learning is critical for numerous biological tasks. Recently, large transformer-based protein language models (pLMs) pretrained on large scale protein sequences have demonstrated significant success in sequence-based…

Machine Learning · Computer Science 2025-08-12 Xuefeng Liu , Songhao Jiang , Chih-chan Tien , Jinbo Xu , Rick Stevens

Molecular property prediction is a key component of AI-driven drug discovery and molecular characterization learning. Despite recent advances, existing methods still face challenges such as limited ability to generalize, and inadequate…

Machine Learning · Computer Science 2024-09-26 Zexing Zhao , Guangsi Shi , Xiaopeng Wu , Ruohua Ren , Xiaojun Gao , Fuyi Li

Point cloud registration (PCR) is a fundamental task in 3D computer vision and robotics. Most learning-based PCR methods rely on Transformer architectures, which suffer from quadratic computational complexity. This limitation restricts the…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Bingxi Liu , An Liu , Hao Chen , Huaqi Tao , Jinqiang Cui , Yiqun Wang , Hong Zhang

Predicting whether a molecule can cross the blood-brain barrier (BBB) is a key step in early-stage neuro-pharmaceutical design, directly influencing the efficiency and success rate of drug development. Traditional methods based on…

Quantitative Methods · Quantitative Biology 2026-03-16 Zihan Yang , Yuchen Xiao

Mimicking the real interaction trajectory in the inference of the world model has been shown to improve the sample efficiency of model-based reinforcement learning (MBRL) algorithms. Many methods directly use known state sequences for…

Machine Learning · Computer Science 2025-01-22 Qian He , Wenqi Liang , Chunhui Hao , Gan Sun , Jiandong Tian

Molecular property prediction refers to the task of labeling molecules with some biochemical properties, playing a pivotal role in the drug discovery and design process. Recently, with the advancement of machine learning, deep…

Molecular Networks · Quantitative Biology 2024-01-10 Zeyu Wang , Tianyi Jiang , Jinhuan Wang , Qi Xuan

In this paper, we propose a self-prior guided Mamba-UNet network (SMamba-UNet) for medical image super-resolution. Existing methods are primarily based on convolutional neural networks (CNNs) or Transformers. CNNs-based methods fail to…

Computer Vision and Pattern Recognition · Computer Science 2024-07-09 Zexin Ji , Beiji Zou , Xiaoyan Kui , Pierre Vera , Su Ruan

Although artificial intelligence (AI) has made significant progress in understanding molecules in a wide range of fields, existing models generally acquire the single cognitive ability from the single molecular modality. Since the hierarchy…

Machine Learning · Computer Science 2022-09-14 Bing Su , Dazhao Du , Zhao Yang , Yujie Zhou , Jiangmeng Li , Anyi Rao , Hao Sun , Zhiwu Lu , Ji-Rong Wen