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200 papers

The seasonal production of fruit and seeds resembles opening a feeding station, such as a restaurant agents/ customers will arrive at a certain rate and pick fruit (get served) at a certain rate following some appropriate processes.…

Optimization and Control · Mathematics 2015-03-09 Muhammad Sulaiman , Abdellah Salhi

Motile cilia drive biological fluid transport through whip-like beating motions that synchronize into metachronal waves. The lengths of these cilia span three orders of magnitude, from microns in human airways to millimeters in ctenophores.…

Active fluid transport is a hallmark of many biological transport networks. While animal circulatory systems generally rely on a single heart to drive flows, other organisms employ decentralized local pumps to distribute fluids and…

Biological Physics · Physics 2024-01-04 Adam B. Dionne , Katharine E. Jensen , Henrik Ronellenfitsch

Recent observations of coherence in photosynthetic complexes have led to the question of whether quantum effects can occur in vivo, not under femtosecond laser pulses but in incoherent sunlight and at steady state, and, if so, whether the…

Biological Physics · Physics 2013-01-15 Ivan Kassal , Joel Yuen-Zhou , Saleh Rahimi-Keshari

Interactions between swimming cells and surfaces are essential to many microbiological processes, from bacterial biofilm formation to human fertilization. However, in spite of their fundamental importance, relatively little is known about…

Biological Physics · Physics 2013-02-04 Vasily Kantsler , Jörn Dunkel , Marco Polin , Raymond E. Goldstein

As nutrients travel through microcirculation and are absorbed, their availability continuously decreases. However, a uniform nutrient distribution is critical, as it prevents tissue death in poorly supplied areas. How, then, do vascular…

Tissues and Organs · Quantitative Biology 2024-11-18 Georgios Gounaris , Mija Jovchevska , Miguel Ruiz Garcia , Eleni Katifori

Transport of liquid mixtures through porous membranes is central to processes such as desalination, chemical separations and energy harvesting, with ultrathin membranes made from novel 2D nanomaterials showing exceptional promise. Here we…

Soft Condensed Matter · Physics 2019-08-06 Daniel J. Rankin , Lydéric Bocquet , David M. Huang

We investigate the transport and adsorption of solutes within graded porous filters characterised by a spatially varying microstructure. While classical homogenisation theory typically assumes periodic media, we employ the method of…

Fluid Dynamics · Physics 2026-03-24 Václav Klika , Vojtěch Kužel

Due to the continuously improving capabilities of mobile edges, recommender systems start to deploy models on edges to alleviate network congestion caused by frequent mobile requests. Several studies have leveraged the proximity of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-18 Kairui Fu , Shengyu Zhang , Zheqi Lv , Jingyuan Chen , Jiwei Li

Micro-scale cilia play a vital role in mucociliary clearance (MCC) in the human respiratory airways. In this numerical study, we examine fluid transport driven by the active beating of a single filament immersed in a three-dimensional…

Fluid Dynamics · Physics 2026-02-02 Qian Mao , Umberto d'Ortona , Julien Favier

The incredible success of transformers on sequence modeling tasks can be largely attributed to the self-attention mechanism, which allows information to be transferred between different parts of a sequence. Self-attention allows…

Machine Learning · Computer Science 2024-08-14 Eshaan Nichani , Alex Damian , Jason D. Lee

We present a general theoretical framework to discuss mechanisms of morphogen transport and gradient formation in a cell layer. Trafficking events on the cellular scale lead to transport on larger scales. We discuss in particular the case…

Other Quantitative Biology · Quantitative Biology 2015-06-26 T. Bollenbach , K. Kruse , P. Pantazis , M. Gonzalez-Gaitan , F. Julicher

Flux of rigid or soft particles (such as drops, vesicles, red blood cells, etc.) in a channel is a complex function of particle concentration, which depends on the details of induced dissipation and suspension structure due to hydrodynamic…

From the smallest biological systems to the largest cosmological structures, spatial domains undergo expansion and contraction. Within these growing domains, diffusive transport is a common phenomenon. Mathematical models have been widely…

Populations and Evolution · Quantitative Biology 2023-06-27 Stuart T. Johnston , Matthew J. Simpson

We derive the system of differential equations for the gradient flow characterizing the training process of linear in-context learning in full generality. Next, we explore the geometric structure of the gradient flows in two instances,…

Dynamical Systems · Mathematics 2024-12-24 Songtao Lu , Yingdong Lu , Tomasz Nowicki

We have studied experimentally transport properties in a slowly driven granular system which recently was shown to display self-organized criticality [Frette {\em et al., Nature} {\bf 379}, 49 (1996)]. Tracer particles were added to a pile…

Condensed Matter · Physics 2016-08-15 Kim Christensen , Álvaro Corral , Vidar Frette , Jens Feder , Torstein Jøssang

The robustness of connectivity and the efficiency of paths are incompatible in many real networks. We propose a self-organization mechanism for incrementally generating onion-like networks with positive degree-degree correlations whose…

Physics and Society · Physics 2016-05-09 Yukio Hayashi

We investigate image segmentation of cells under the lens of scalar fields. Our goal is to learn a continuous scalar field on image domains such that its segmentation produces robust instances for cells present in images. This field is a…

Computer Vision and Pattern Recognition · Computer Science 2025-11-19 Kevin I. Ruiz Vargas , Gabriel G. Galdino , Tsang Ing Ren , Alexandre L. Cunha

Recent experimental studies have demonstrated that cellular motion can be directed by topographical gradients, such as those resulting from spatial variations in the features of a micropatterned substrate. This phenomenon, known as…

In this article, we investigate the convergence behavior of two classes of gathering protocols with fixed circulant topologies using tools from dynamical systems. Given a fixed number of mobile entities moving in the Euclidean plane, we…

Dynamical Systems · Mathematics 2026-04-15 Raphael Gerlach , Sören von der Gracht , Michael Dellnitz