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Graph contrastive learning (GCL) has attracted a surge of attention due to its superior performance for learning node/graph representations without labels. However, in practice, the underlying class distribution of unlabeled nodes for the…

Machine Learning · Computer Science 2023-05-04 Liang Zeng , Lanqing Li , Ziqi Gao , Peilin Zhao , Jian Li

Graph Neural Networks (GNNs) have been predominant for graph learning tasks; however, recent studies showed that a well-known graph algorithm, Label Propagation (LP), combined with a shallow neural network can achieve comparable performance…

Machine Learning · Computer Science 2022-12-01 Zhiqiang Zhong , Sergey Ivanov , Jun Pang

Graph Neural Networks have recently become a prevailing paradigm for various high-impact graph analytical problems. Existing efforts can be mainly categorized as spectral-based and spatial-based methods. The major challenge for the former…

Machine Learning · Computer Science 2022-02-22 Yushun Dong , Kaize Ding , Brian Jalaian , Shuiwang Ji , Jundong Li

Graph classification is essential for understanding complex biological systems, where molecular structures and interactions are naturally represented as graphs. Traditional graph neural networks (GNNs) perform well on static tasks but…

Machine Learning · Computer Science 2025-10-29 Ding Zhang , Jane Downer , Can Chen , Ren Wang

Graph Neural Networks(GNNs) are a family of neural models tailored for graph-structure data and have shown superior performance in learning representations for graph-structured data. However, training GNNs on large graphs remains…

Machine Learning · Computer Science 2022-12-13 Junwei Su

Subgraph classification is an emerging field in graph representation learning where the task is to classify a group of nodes (i.e., a subgraph) within a graph. Subgraph classification has applications such as predicting the cellular…

Machine Learning · Computer Science 2023-04-19 Shweta Ann Jacob , Paul Louis , Amirali Salehi-Abari

Graph node classification with few labeled nodes presents significant challenges due to limited supervision. Conventional methods often exploit the graph in a transductive learning manner. They fail to effectively utilize the abundant…

Machine Learning · Computer Science 2024-07-03 Shuaike Xu , Xiaolin Zhang , Peng Zhang , Kun Zhan

Property prediction on molecular graphs is an important application of Graph Neural Networks. Recently, unlabeled molecular data has become abundant, which facilitates the rapid development of self-supervised learning for GNNs in the…

Machine Learning · Computer Science 2023-10-31 Kha-Dinh Luong , Ambuj Singh

We propose a novel benchmarking methodology for graph neural networks (GNNs) based on the graph alignment problem, a combinatorial optimization task that generalizes graph isomorphism by aligning two unlabeled graphs to maximize overlapping…

Machine Learning · Computer Science 2025-05-20 Adrien Lagesse , Marc Lelarge

Node-level graph anomaly detection (GAD) plays a critical role in identifying anomalous nodes from graph-structured data in various domains such as medicine, social networks, and e-commerce. However, challenges have arisen due to the…

Machine Learning · Computer Science 2023-11-29 Junjun Pan , Yixin Liu , Yizhen Zheng , Shirui Pan

Graph condensation (GC) is an emerging technique designed to learn a significantly smaller graph that retains the essential information of the original graph. This condensed graph has shown promise in accelerating graph neural networks…

Machine Learning · Computer Science 2025-11-11 Shengbo Gong , Juntong Ni , Noveen Sachdeva , Carl Yang , Wei Jin

Many works show that node-level predictions of Graph Neural Networks (GNNs) are unrobust to small, often termed adversarial, changes to the graph structure. However, because manual inspection of a graph is difficult, it is unclear if the…

Machine Learning · Computer Science 2023-05-03 Lukas Gosch , Daniel Sturm , Simon Geisler , Stephan Günnemann

Node classification using Graph Neural Networks (GNNs) has been widely applied in various practical scenarios, such as predicting user interests and detecting communities in social networks. However, recent studies have shown that…

Machine Learning · Computer Science 2024-08-14 Shuqi He , Jun Zhuang , Ding Wang , Jun Song

Although many real-world applications, such as disease prediction, and fault detection suffer from class imbalance, most existing graph-based classification methods ignore the skewness of the distribution of classes; therefore, tend to be…

Machine Learning · Computer Science 2024-07-01 Mahdi Mohammadizadeh , Arash Mozhdehi , Yani Ioannou , Xin Wang

Graph neural networks (GNNs) learn to represent nodes by aggregating information from their neighbors. As GNNs increase in depth, their receptive field grows exponentially, leading to high memory costs. Several existing methods address this…

Machine Learning · Computer Science 2025-07-16 Taraneh Younesian , Daniel Daza , Emile van Krieken , Thiviyan Thanapalasingam , Peter Bloem

Graph neural networks (GNNs) are a class of effective deep learning models for node classification tasks; yet their predictive capability may be severely compromised under adversarially designed unnoticeable perturbations to the graph…

Machine Learning · Computer Science 2023-01-05 Xiao Zang , Jie Chen , Bo Yuan

Effective and efficient graph representation learning is essential for enabling critical downstream tasks, such as node classification, link prediction, and subgraph search. However, existing graph neural network (GNN) architectures often…

Machine Learning · Computer Science 2025-09-24 Sixuan Wang , Jiao Yin , Jinli Cao , MingJian Tang , Hua Wang , Yanchun Zhang

Over the past few years, graph neural networks (GNN) and label propagation-based methods have made significant progress in addressing node classification tasks on graphs. However, in addition to their reliance on elaborate architectures and…

Machine Learning · Computer Science 2021-10-18 Yangkun Wang , Jiarui Jin , Weinan Zhang , Yong Yu , Zheng Zhang , David Wipf

Identifying structures in common forms the basis for networked systems design and optimization. However, real structures represented by graphs are often of varying sizes, leading to the low accuracy of traditional graph classification…

Machine Learning · Computer Science 2024-09-04 Xiaoyu Zhang , Wenchuan Yang , Jiawei Feng , Bitao Dai , Tianci Bu , Xin Lu

Graph neural networks (GNNs) have been used extensively for addressing problems in drug design and discovery. Both ligand and target molecules are represented as graphs with node and edge features encoding information about atomic elements…

Machine Learning · Computer Science 2021-10-14 Dhananjay Bhaskar , Jackson D. Grady , Michael A. Perlmutter , Smita Krishnaswamy
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